miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27028 5' -56.5 NC_005832.1 + 90909 0.67 0.803877
Target:  5'- gCCGAgGGCGGGcCCCUCaggaggcuccuuacgAggcagcuggACGCCGUg -3'
miRNA:   3'- -GGCUgCCGUUCuGGGAG---------------U---------UGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 10191 0.67 0.809231
Target:  5'- -aGGCGGUggagAGGAUCCUCAugacuucCGCCGcCg -3'
miRNA:   3'- ggCUGCCG----UUCUGGGAGUu------GCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 32316 0.67 0.800276
Target:  5'- uUGugGGCuccGGACCC-CA-UGCCGUg -3'
miRNA:   3'- gGCugCCGu--UCUGGGaGUuGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 7074 0.67 0.791166
Target:  5'- cCCcAUGGCGu--CCCUCAcugUGCCGUCg -3'
miRNA:   3'- -GGcUGCCGUucuGGGAGUu--GCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 12068 0.67 0.809231
Target:  5'- gCCGGCGGCAaacgcagaaGGAUCggUCAcguAgGCCGUCu -3'
miRNA:   3'- -GGCUGCCGU---------UCUGGg-AGU---UgCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 1739 0.67 0.766819
Target:  5'- -aGACGGUggacaacugccuccaGcAGGCCCUCAuggccacaGCCGUCa -3'
miRNA:   3'- ggCUGCCG---------------U-UCUGGGAGUug------CGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 104231 0.67 0.772517
Target:  5'- aCG-CGGCc--ACCCUgccccaguuuaCAACGCCGUCu -3'
miRNA:   3'- gGCuGCCGuucUGGGA-----------GUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 94211 0.67 0.791166
Target:  5'- cUCGACGGUucGGGCCUcaaguacaUCAGgGCCGcCa -3'
miRNA:   3'- -GGCUGCCGu-UCUGGG--------AGUUgCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 54480 0.67 0.809231
Target:  5'- cCCGcCGaaaAAGGCCCcCAGCGCCG-Cg -3'
miRNA:   3'- -GGCuGCcg-UUCUGGGaGUUGCGGCaG- -5'
27028 5' -56.5 NC_005832.1 + 4934 0.68 0.753357
Target:  5'- -gGACGGCGAG-CCCgagaCGAUGCC-UCc -3'
miRNA:   3'- ggCUGCCGUUCuGGGa---GUUGCGGcAG- -5'
27028 5' -56.5 NC_005832.1 + 94565 0.68 0.752387
Target:  5'- gCCcACGGCGGguuuaacGAgCCUCAccACGCCGUa -3'
miRNA:   3'- -GGcUGCCGUU-------CUgGGAGU--UGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 95814 0.68 0.74361
Target:  5'- -gGAgGGCAcguguucaGGGCCCUCGagagggaguGCGCCGa- -3'
miRNA:   3'- ggCUgCCGU--------UCUGGGAGU---------UGCGGCag -5'
27028 5' -56.5 NC_005832.1 + 56947 0.68 0.733762
Target:  5'- aUCGGCGGUAAuguccuGAUCCgucacCAugGUCGUCa -3'
miRNA:   3'- -GGCUGCCGUU------CUGGGa----GUugCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 1237 0.68 0.74361
Target:  5'- gCCGGCugGGCcaccAGGCCC--GACGCCGUg -3'
miRNA:   3'- -GGCUG--CCGu---UCUGGGagUUGCGGCAg -5'
27028 5' -56.5 NC_005832.1 + 11816 0.68 0.733762
Target:  5'- cCUGGCucuGGCcGGGCuCCUCGugauggcCGCCGUCg -3'
miRNA:   3'- -GGCUG---CCGuUCUG-GGAGUu------GCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 62157 0.68 0.74361
Target:  5'- aCUGACGaGCAGauGGCCCUCuAugGguaaCCGUCu -3'
miRNA:   3'- -GGCUGC-CGUU--CUGGGAG-UugC----GGCAG- -5'
27028 5' -56.5 NC_005832.1 + 2132 0.69 0.69357
Target:  5'- uCCGAgGGggaCAGGGCCaCgaccaUGACGCCGUCg -3'
miRNA:   3'- -GGCUgCC---GUUCUGG-Ga----GUUGCGGCAG- -5'
27028 5' -56.5 NC_005832.1 + 59873 0.69 0.70372
Target:  5'- aCGACGGgcaGAGACCCgc-GCGaCCGUg -3'
miRNA:   3'- gGCUGCCg--UUCUGGGaguUGC-GGCAg -5'
27028 5' -56.5 NC_005832.1 + 19707 0.69 0.683368
Target:  5'- uCCGAaacCGGcCAAGACCgUCAGgGggaCCGUCa -3'
miRNA:   3'- -GGCU---GCC-GUUCUGGgAGUUgC---GGCAG- -5'
27028 5' -56.5 NC_005832.1 + 33475 0.69 0.673123
Target:  5'- cCCG-CGGC--GACCCUCAggggacucgACGCCaagGUCa -3'
miRNA:   3'- -GGCuGCCGuuCUGGGAGU---------UGCGG---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.