Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27028 | 5' | -56.5 | NC_005832.1 | + | 19836 | 0.69 | 0.656664 |
Target: 5'- cCUGACGGUcuuggccgguuucggAGGACCCgCcGCGCCGg- -3' miRNA: 3'- -GGCUGCCG---------------UUCUGGGaGuUGCGGCag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 20494 | 0.66 | 0.818023 |
Target: 5'- -gGACGGU---GCCCUUGAUGCUGUa -3' miRNA: 3'- ggCUGCCGuucUGGGAGUUGCGGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 20809 | 0.71 | 0.570191 |
Target: 5'- cCCGAUccggaaGGCAGGGCCCUCAccaGgGCgGUa -3' miRNA: 3'- -GGCUG------CCGUUCUGGGAGU---UgCGgCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 28075 | 0.74 | 0.406915 |
Target: 5'- gCCGucucCGGCGGGACCCUuugccaccuugacCAccGCGUCGUCg -3' miRNA: 3'- -GGCu---GCCGUUCUGGGA-------------GU--UGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 29243 | 0.67 | 0.800276 |
Target: 5'- ----aGGCucacGACCgagCUCAACGCCGUCc -3' miRNA: 3'- ggcugCCGuu--CUGG---GAGUUGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 32316 | 0.67 | 0.800276 |
Target: 5'- uUGugGGCuccGGACCC-CA-UGCCGUg -3' miRNA: 3'- gGCugCCGu--UCUGGGaGUuGCGGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 33155 | 0.67 | 0.791166 |
Target: 5'- gCCGAcaCGGUGugguGACCUccUAugGCCGUCg -3' miRNA: 3'- -GGCU--GCCGUu---CUGGGa-GUugCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 33475 | 0.69 | 0.673123 |
Target: 5'- cCCG-CGGC--GACCCUCAggggacucgACGCCaagGUCa -3' miRNA: 3'- -GGCuGCCGuuCUGGGAGU---------UGCGG---CAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 39410 | 0.66 | 0.843332 |
Target: 5'- uCCGucuGCGcccGCGGGGcCCCUUuACGCCGUUc -3' miRNA: 3'- -GGC---UGC---CGUUCU-GGGAGuUGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 39499 | 0.71 | 0.574272 |
Target: 5'- gCCGAUcccucugcuccccugGGCcccuGGGCCCUgGuCGCCGUCg -3' miRNA: 3'- -GGCUG---------------CCGu---UCUGGGAgUuGCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 41307 | 0.72 | 0.500291 |
Target: 5'- uCCGACaGGaGAGcguCCCUgAugGCCGUCa -3' miRNA: 3'- -GGCUG-CCgUUCu--GGGAgUugCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 43351 | 0.66 | 0.859242 |
Target: 5'- -aGAC-GC-GGACCCcgCAGCGCCGg- -3' miRNA: 3'- ggCUGcCGuUCUGGGa-GUUGCGGCag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 44535 | 0.7 | 0.63189 |
Target: 5'- gCGGCgugcaagcugGGCAAGACCUaCGACGCCa-- -3' miRNA: 3'- gGCUG----------CCGUUCUGGGaGUUGCGGcag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 45965 | 0.67 | 0.791166 |
Target: 5'- aCCGACGG-GGGuCCagaguaCAugGCCGUCc -3' miRNA: 3'- -GGCUGCCgUUCuGGga----GUugCGGCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 49188 | 0.7 | 0.639121 |
Target: 5'- cCCGACguGGCGuuugcGGaaaugucuauagacGCCUUCAACGCCGUg -3' miRNA: 3'- -GGCUG--CCGU-----UC--------------UGGGAGUUGCGGCAg -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 50400 | 0.81 | 0.160741 |
Target: 5'- aCGGCGGCAGagagguGGCCCUCGACGCCcgacucugcuugGUCa -3' miRNA: 3'- gGCUGCCGUU------CUGGGAGUUGCGG------------CAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 50937 | 0.67 | 0.78191 |
Target: 5'- aCGACGGUAGGACUggaUCGGC-CgGUCc -3' miRNA: 3'- gGCUGCCGUUCUGGg--AGUUGcGgCAG- -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 53042 | 0.69 | 0.662844 |
Target: 5'- gUCGcCGGCAGGAUCCUgAGgGCCa-- -3' miRNA: 3'- -GGCuGCCGUUCUGGGAgUUgCGGcag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 53977 | 0.79 | 0.20198 |
Target: 5'- cCCGGCuucGGCAAGACCUUCAugGCCc-- -3' miRNA: 3'- -GGCUG---CCGUUCUGGGAGUugCGGcag -5' |
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27028 | 5' | -56.5 | NC_005832.1 | + | 54480 | 0.67 | 0.809231 |
Target: 5'- cCCGcCGaaaAAGGCCCcCAGCGCCG-Cg -3' miRNA: 3'- -GGCuGCcg-UUCUGGGaGUUGCGGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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