miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 3' -56.8 NC_005832.1 + 58942 0.67 0.775018
Target:  5'- uCC-CCAUGG-GAgugaauugGACCCaCACUGCCg -3'
miRNA:   3'- uGGaGGUGCCgCU--------UUGGGaGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 97023 0.67 0.775018
Target:  5'- cCCUCUGUGGCGggGagaaCCUCGCcgauggaccUGCCc -3'
miRNA:   3'- uGGAGGUGCCGCuuUg---GGAGUG---------ACGG- -5'
27034 3' -56.8 NC_005832.1 + 33464 0.67 0.774068
Target:  5'- aGCCUaucuugcCCGCGGCGA--CCCUCaggggACUcgacGCCa -3'
miRNA:   3'- -UGGA-------GGUGCCGCUuuGGGAG-----UGA----CGG- -5'
27034 3' -56.8 NC_005832.1 + 76533 0.67 0.765463
Target:  5'- uCCUCC-CGGCGcAggUCCUCAaguaguagagGCCc -3'
miRNA:   3'- uGGAGGuGCCGC-UuuGGGAGUga--------CGG- -5'
27034 3' -56.8 NC_005832.1 + 26471 0.67 0.765463
Target:  5'- aGCCaCC-CGGCG--GCCCUCGCcaccuuaaagGCCg -3'
miRNA:   3'- -UGGaGGuGCCGCuuUGGGAGUGa---------CGG- -5'
27034 3' -56.8 NC_005832.1 + 100506 0.67 0.7645
Target:  5'- uCCUCaugGGUGAAGCCCUCucccucgGCgGCCu -3'
miRNA:   3'- uGGAGgugCCGCUUUGGGAG-------UGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 95447 0.67 0.755785
Target:  5'- aGCCUCCcguaguCGGCGcacuCCCUCuCgaggGCCc -3'
miRNA:   3'- -UGGAGGu-----GCCGCuuu-GGGAGuGa---CGG- -5'
27034 3' -56.8 NC_005832.1 + 21205 0.67 0.755785
Target:  5'- uACCgUCCugGGUGAcgAACCC--GCaGCCg -3'
miRNA:   3'- -UGG-AGGugCCGCU--UUGGGagUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 23293 0.67 0.745995
Target:  5'- gGCgCUCCAaaGGCGAccuCCUUCACcuugaUGCCg -3'
miRNA:   3'- -UG-GAGGUg-CCGCUuu-GGGAGUG-----ACGG- -5'
27034 3' -56.8 NC_005832.1 + 28213 0.67 0.745995
Target:  5'- aACCUCCACGGCaaAGGgCCUCuugGUCc -3'
miRNA:   3'- -UGGAGGUGCCGc-UUUgGGAGugaCGG- -5'
27034 3' -56.8 NC_005832.1 + 98842 0.67 0.745995
Target:  5'- cCCUgCACGGCGGAaggcACCagaUCA-UGCCc -3'
miRNA:   3'- uGGAgGUGCCGCUU----UGGg--AGUgACGG- -5'
27034 3' -56.8 NC_005832.1 + 54278 0.67 0.745995
Target:  5'- uCCUCUuguCuGUGAGGCCCUCucacCUGCUg -3'
miRNA:   3'- uGGAGGu--GcCGCUUUGGGAGu---GACGG- -5'
27034 3' -56.8 NC_005832.1 + 10679 0.67 0.745995
Target:  5'- cACCUCCugucCGGCauGACCgCcagggagCACUGCCu -3'
miRNA:   3'- -UGGAGGu---GCCGcuUUGG-Ga------GUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 95838 0.67 0.745995
Target:  5'- gACCgCCGCaGCGGgaaaGACUCUCGCcgcGCCg -3'
miRNA:   3'- -UGGaGGUGcCGCU----UUGGGAGUGa--CGG- -5'
27034 3' -56.8 NC_005832.1 + 90745 0.67 0.736102
Target:  5'- gGCCgcagUCACGGCGu--CCa--GCUGCCu -3'
miRNA:   3'- -UGGa---GGUGCCGCuuuGGgagUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 36608 0.67 0.736102
Target:  5'- gUCUUUACGGCGGGcCCC-CACgGCUg -3'
miRNA:   3'- uGGAGGUGCCGCUUuGGGaGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 96757 0.67 0.736102
Target:  5'- aACgUCCACGGCGu--CCCUgG-UGCUc -3'
miRNA:   3'- -UGgAGGUGCCGCuuuGGGAgUgACGG- -5'
27034 3' -56.8 NC_005832.1 + 103913 0.67 0.736102
Target:  5'- cACCUCCuCGGCaGAGACggCUUCACcGUCc -3'
miRNA:   3'- -UGGAGGuGCCG-CUUUG--GGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 41432 0.67 0.726115
Target:  5'- cGCCUCCcugACGGCGgcGgCCUC-CUccucgGCCu -3'
miRNA:   3'- -UGGAGG---UGCCGCuuUgGGAGuGA-----CGG- -5'
27034 3' -56.8 NC_005832.1 + 12353 0.67 0.726115
Target:  5'- cUCUUCAUaGCGu--CCCUCAgCUGCCa -3'
miRNA:   3'- uGGAGGUGcCGCuuuGGGAGU-GACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.