miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 3' -56.8 NC_005832.1 + 9899 0.67 0.726115
Target:  5'- gGCCUCCGCGGCcGAcgcGCCCgacgaaGCggGCa -3'
miRNA:   3'- -UGGAGGUGCCG-CUu--UGGGag----UGa-CGg -5'
27034 3' -56.8 NC_005832.1 + 2138 0.68 0.716045
Target:  5'- gGCCcCCAuauuCGGCGAGGCCCUgucgguggaCACgagggacGCCa -3'
miRNA:   3'- -UGGaGGU----GCCGCUUUGGGA---------GUGa------CGG- -5'
27034 3' -56.8 NC_005832.1 + 81068 0.68 0.715034
Target:  5'- aGCCUCC-UGGCGGucuuuacgucgggGACCUUgACgGCCc -3'
miRNA:   3'- -UGGAGGuGCCGCU-------------UUGGGAgUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 81263 0.68 0.7059
Target:  5'- cACCugggagUCUGCGGCuuucgcAGCCCUCACUuggGCCa -3'
miRNA:   3'- -UGG------AGGUGCCGcu----UUGGGAGUGA---CGG- -5'
27034 3' -56.8 NC_005832.1 + 78816 0.68 0.7059
Target:  5'- uACC-CCGCGGUGAuuACCUUCGacgUGCUc -3'
miRNA:   3'- -UGGaGGUGCCGCUu-UGGGAGUg--ACGG- -5'
27034 3' -56.8 NC_005832.1 + 26937 0.68 0.7059
Target:  5'- uGCCUCUGCaaGCGugcACCCUC-CUGCUc -3'
miRNA:   3'- -UGGAGGUGc-CGCuu-UGGGAGuGACGG- -5'
27034 3' -56.8 NC_005832.1 + 90602 0.68 0.7059
Target:  5'- aGCCUcuuuaCCAUGGCGucGAGCaCCUCAgaGUCu -3'
miRNA:   3'- -UGGA-----GGUGCCGC--UUUG-GGAGUgaCGG- -5'
27034 3' -56.8 NC_005832.1 + 38093 0.68 0.7059
Target:  5'- uCCUcCCACGGUGGcgaugggguacGGCCCUgGCacGCCu -3'
miRNA:   3'- uGGA-GGUGCCGCU-----------UUGGGAgUGa-CGG- -5'
27034 3' -56.8 NC_005832.1 + 70855 0.68 0.695692
Target:  5'- aGCCgcggCUGCGGCGGccuCUCUgACUGCUu -3'
miRNA:   3'- -UGGa---GGUGCCGCUuu-GGGAgUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 56401 0.68 0.685428
Target:  5'- cCCUCCugcCGGCcaGGAACCC-CACUcCCa -3'
miRNA:   3'- uGGAGGu--GCCG--CUUUGGGaGUGAcGG- -5'
27034 3' -56.8 NC_005832.1 + 60437 0.68 0.675119
Target:  5'- gGCCaCCACGGacuGGAACCCUCGg-GCa -3'
miRNA:   3'- -UGGaGGUGCCg--CUUUGGGAGUgaCGg -5'
27034 3' -56.8 NC_005832.1 + 7595 0.68 0.675119
Target:  5'- cACCUUCAgCGGC---ACCacgCACUGCCu -3'
miRNA:   3'- -UGGAGGU-GCCGcuuUGGga-GUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 78674 0.69 0.663737
Target:  5'- cGCC-CCAgaguggcCGGCGcAGACCgCUCAC-GCCa -3'
miRNA:   3'- -UGGaGGU-------GCCGC-UUUGG-GAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 66404 0.69 0.6544
Target:  5'- gGCCUcCCugGGaUGGGACUUgggagaCGCUGCCg -3'
miRNA:   3'- -UGGA-GGugCC-GCUUUGGGa-----GUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 67160 0.69 0.6544
Target:  5'- gGCCcucgCCACGGCcgccgccaGGGCCCUCGCaGCg -3'
miRNA:   3'- -UGGa---GGUGCCGc-------UUUGGGAGUGaCGg -5'
27034 3' -56.8 NC_005832.1 + 44107 0.69 0.6544
Target:  5'- gGCC-CCAguCGGgGAGGCacaccaCCUCGCUGUCg -3'
miRNA:   3'- -UGGaGGU--GCCgCUUUG------GGAGUGACGG- -5'
27034 3' -56.8 NC_005832.1 + 53973 0.69 0.644009
Target:  5'- cCCUCCcggcuuCGGCaAGACCUUCAUgGCCc -3'
miRNA:   3'- uGGAGGu-----GCCGcUUUGGGAGUGaCGG- -5'
27034 3' -56.8 NC_005832.1 + 47392 0.69 0.644009
Target:  5'- gAUgUCUGCGGCGGugacggGAUCCUUguuGCUGCCc -3'
miRNA:   3'- -UGgAGGUGCCGCU------UUGGGAG---UGACGG- -5'
27034 3' -56.8 NC_005832.1 + 97280 0.69 0.630487
Target:  5'- gGCUcuuugCCACGGCGucugccgcagccuuuGCCCUCAggGCCa -3'
miRNA:   3'- -UGGa----GGUGCCGCuu-------------UGGGAGUgaCGG- -5'
27034 3' -56.8 NC_005832.1 + 5167 0.69 0.627366
Target:  5'- aGCCUCCugGgGUGGAACCUgacgugagaucccuuUCccCUGCCc -3'
miRNA:   3'- -UGGAGGugC-CGCUUUGGG---------------AGu-GACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.