Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27034 | 5' | -57.5 | NC_005832.1 | + | 90387 | 0.7 | 0.442909 |
Target: 5'- cAAAGUCCAcGGGGGCCCUCcucgacaGCUUg- -3' miRNA: 3'- -UUUCAGGUuCCUCCGGGAGc------CGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 90776 | 0.7 | 0.461974 |
Target: 5'- aGGAGccUCCuGAGGGGcccGCCCUCGGCCg-- -3' miRNA: 3'- -UUUC--AGG-UUCCUC---CGGGAGCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 92557 | 0.68 | 0.573398 |
Target: 5'- cGGGUCCGAGGAcgcgacggggacGGCUCUgGGCUg-- -3' miRNA: 3'- uUUCAGGUUCCU------------CCGGGAgCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 94195 | 0.66 | 0.721102 |
Target: 5'- gAAAG-CCGggcuGGGAGGCCCUCuuuccGCCa-- -3' miRNA: 3'- -UUUCaGGU----UCCUCCGGGAGc----CGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 96365 | 0.66 | 0.721102 |
Target: 5'- ---cUCCGAGGAGagcucagcGCCCugUCGGCCg-- -3' miRNA: 3'- uuucAGGUUCCUC--------CGGG--AGCCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 100222 | 0.72 | 0.346667 |
Target: 5'- cGGGGUCCGAGGAGGCaaaCGGCUUc- -3' miRNA: 3'- -UUUCAGGUUCCUCCGggaGCCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 104105 | 0.68 | 0.573398 |
Target: 5'- --cGUCCGcGGcGGCCCUCagGGCCa-- -3' miRNA: 3'- uuuCAGGUuCCuCCGGGAG--CCGGaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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