miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27034 5' -57.5 NC_005832.1 + 90387 0.7 0.442909
Target:  5'- cAAAGUCCAcGGGGGCCCUCcucgacaGCUUg- -3'
miRNA:   3'- -UUUCAGGUuCCUCCGGGAGc------CGGAau -5'
27034 5' -57.5 NC_005832.1 + 90776 0.7 0.461974
Target:  5'- aGGAGccUCCuGAGGGGcccGCCCUCGGCCg-- -3'
miRNA:   3'- -UUUC--AGG-UUCCUC---CGGGAGCCGGaau -5'
27034 5' -57.5 NC_005832.1 + 92557 0.68 0.573398
Target:  5'- cGGGUCCGAGGAcgcgacggggacGGCUCUgGGCUg-- -3'
miRNA:   3'- uUUCAGGUUCCU------------CCGGGAgCCGGaau -5'
27034 5' -57.5 NC_005832.1 + 94195 0.66 0.721102
Target:  5'- gAAAG-CCGggcuGGGAGGCCCUCuuuccGCCa-- -3'
miRNA:   3'- -UUUCaGGU----UCCUCCGGGAGc----CGGaau -5'
27034 5' -57.5 NC_005832.1 + 96365 0.66 0.721102
Target:  5'- ---cUCCGAGGAGagcucagcGCCCugUCGGCCg-- -3'
miRNA:   3'- uuucAGGUUCCUC--------CGGG--AGCCGGaau -5'
27034 5' -57.5 NC_005832.1 + 100222 0.72 0.346667
Target:  5'- cGGGGUCCGAGGAGGCaaaCGGCUUc- -3'
miRNA:   3'- -UUUCAGGUUCCUCCGggaGCCGGAau -5'
27034 5' -57.5 NC_005832.1 + 104105 0.68 0.573398
Target:  5'- --cGUCCGcGGcGGCCCUCagGGCCa-- -3'
miRNA:   3'- uuuCAGGUuCCuCCGGGAG--CCGGaau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.