Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27034 | 5' | -57.5 | NC_005832.1 | + | 54943 | 0.66 | 0.689892 |
Target: 5'- cGGGGUCC-AGGAcGGUCCccccgUCGGCCcUUAg -3' miRNA: 3'- -UUUCAGGuUCCU-CCGGG-----AGCCGG-AAU- -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 12992 | 0.66 | 0.70036 |
Target: 5'- cGGGGUCCGucAGGcugggguccAGGCCCcUGGUCUUGa -3' miRNA: 3'- -UUUCAGGU--UCC---------UCCGGGaGCCGGAAU- -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 78277 | 0.66 | 0.70036 |
Target: 5'- --cGUCCuuGaAGGUCCUUGGCCUg- -3' miRNA: 3'- uuuCAGGuuCcUCCGGGAGCCGGAau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 28064 | 0.66 | 0.707652 |
Target: 5'- --uGUCCAGGGugguggggaccaagAGGCCCUUuGCCg-- -3' miRNA: 3'- uuuCAGGUUCC--------------UCCGGGAGcCGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 94195 | 0.66 | 0.721102 |
Target: 5'- gAAAG-CCGggcuGGGAGGCCCUCuuuccGCCa-- -3' miRNA: 3'- -UUUCaGGU----UCCUCCGGGAGc----CGGaau -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 38715 | 0.66 | 0.721102 |
Target: 5'- cGGAGcUCGAGGAGGCUUUCguagaccuGGCCUUc -3' miRNA: 3'- -UUUCaGGUUCCUCCGGGAG--------CCGGAAu -5' |
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27034 | 5' | -57.5 | NC_005832.1 | + | 96365 | 0.66 | 0.721102 |
Target: 5'- ---cUCCGAGGAGagcucagcGCCCugUCGGCCg-- -3' miRNA: 3'- uuucAGGUUCCUC--------CGGG--AGCCGGaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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