miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27037 3' -47 NC_005832.1 + 13398 1.1 0.011641
Target:  5'- cACAAGUACAAAAACUGCCACAGCGUCc -3'
miRNA:   3'- -UGUUCAUGUUUUUGACGGUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 94195 0.81 0.538737
Target:  5'- uCAAGUACAucAGGGCcGCCACGGCGUg -3'
miRNA:   3'- uGUUCAUGU--UUUUGaCGGUGUCGCAg -5'
27037 3' -47 NC_005832.1 + 29156 0.76 0.791348
Target:  5'- -gGAGUGCAAAAGauugugcUUGCCGCAGCGa- -3'
miRNA:   3'- ugUUCAUGUUUUU-------GACGGUGUCGCag -5'
27037 3' -47 NC_005832.1 + 4281 0.76 0.802322
Target:  5'- uGCGAGUGCAccguGACUGCCGUGGUGUUu -3'
miRNA:   3'- -UGUUCAUGUuu--UUGACGGUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 66320 0.75 0.840191
Target:  5'- -gAGGUACGAGAACgucCCGCAGcCGUCu -3'
miRNA:   3'- ugUUCAUGUUUUUGac-GGUGUC-GCAG- -5'
27037 3' -47 NC_005832.1 + 44618 0.74 0.889881
Target:  5'- -aGAGgcugGCAuAGACUGCUgggACAGCGUCc -3'
miRNA:   3'- ugUUCa---UGUuUUUGACGG---UGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 66128 0.73 0.911068
Target:  5'- -aGAGUGugaAAAGAUUGCCGCGGCGg- -3'
miRNA:   3'- ugUUCAUg--UUUUUGACGGUGUCGCag -5'
27037 3' -47 NC_005832.1 + 97288 0.72 0.923748
Target:  5'- -gGAGUcCAGGcucuUUGCCACGGCGUCu -3'
miRNA:   3'- ugUUCAuGUUUuu--GACGGUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 85645 0.72 0.935256
Target:  5'- gGCAGGUGCGGGGGCUucaGCCuCAGaGUCu -3'
miRNA:   3'- -UGUUCAUGUUUUUGA---CGGuGUCgCAG- -5'
27037 3' -47 NC_005832.1 + 96722 0.72 0.943622
Target:  5'- uACAGGUGCAuggccaccgucuuuGAGACgGCagacucuCACGGCGUCa -3'
miRNA:   3'- -UGUUCAUGU--------------UUUUGaCG-------GUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 36584 0.7 0.978546
Target:  5'- uGCAGGUGCGGAaaggccauGACcgagGCCGcCAGgGUCg -3'
miRNA:   3'- -UGUUCAUGUUU--------UUGa---CGGU-GUCgCAG- -5'
27037 3' -47 NC_005832.1 + 98364 0.69 0.982551
Target:  5'- gACAuGUcuaaGCAAAccGGCUGCCcuaaccugucugccGCAGCGUCu -3'
miRNA:   3'- -UGUuCA----UGUUU--UUGACGG--------------UGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 90091 0.69 0.983195
Target:  5'- -----cACAAAGAUgGCCGCGGCGUUc -3'
miRNA:   3'- uguucaUGUUUUUGaCGGUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 54775 0.69 0.985212
Target:  5'- gACAGGUACuuuGAGCagUGCCugGGCa-- -3'
miRNA:   3'- -UGUUCAUGuu-UUUG--ACGGugUCGcag -5'
27037 3' -47 NC_005832.1 + 97136 0.69 0.987039
Target:  5'- -uGAGgGCAAAGGCUGCgGCAGaCGcCg -3'
miRNA:   3'- ugUUCaUGUUUUUGACGgUGUC-GCaG- -5'
27037 3' -47 NC_005832.1 + 26458 0.68 0.98974
Target:  5'- gGCGAGgcCAccgggcagagguucGGAACUGCgACAGCaGUCc -3'
miRNA:   3'- -UGUUCauGU--------------UUUUGACGgUGUCG-CAG- -5'
27037 3' -47 NC_005832.1 + 51081 0.68 0.990168
Target:  5'- gGCAAGgGCAuAGACggGCCAUAGggaGUCa -3'
miRNA:   3'- -UGUUCaUGUuUUUGa-CGGUGUCg--CAG- -5'
27037 3' -47 NC_005832.1 + 1087 0.68 0.994638
Target:  5'- -aAAGUACcu-GGC-GCaCACGGCGUCg -3'
miRNA:   3'- ugUUCAUGuuuUUGaCG-GUGUCGCAG- -5'
27037 3' -47 NC_005832.1 + 97633 0.67 0.995447
Target:  5'- aGCAGGcUGgAGAAGgUGuCCGCGGCGgUCg -3'
miRNA:   3'- -UGUUC-AUgUUUUUgAC-GGUGUCGC-AG- -5'
27037 3' -47 NC_005832.1 + 2187 0.67 0.996154
Target:  5'- gACGucauGGUcCAGcAAAUUGCCACGGCGg- -3'
miRNA:   3'- -UGU----UCAuGUU-UUUGACGGUGUCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.