Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27037 | 3' | -47 | NC_005832.1 | + | 467 | 0.66 | 0.998757 |
Target: 5'- ----aUACAGAAGgaGCCcaggGCGGCGUCc -3' miRNA: 3'- uguucAUGUUUUUgaCGG----UGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 1087 | 0.68 | 0.994638 |
Target: 5'- -aAAGUACcu-GGC-GCaCACGGCGUCg -3' miRNA: 3'- ugUUCAUGuuuUUGaCG-GUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 2187 | 0.67 | 0.996154 |
Target: 5'- gACGucauGGUcCAGcAAAUUGCCACGGCGg- -3' miRNA: 3'- -UGU----UCAuGUU-UUUGACGGUGUCGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 4281 | 0.76 | 0.802322 |
Target: 5'- uGCGAGUGCAccguGACUGCCGUGGUGUUu -3' miRNA: 3'- -UGUUCAUGUuu--UUGACGGUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 12768 | 0.66 | 0.998992 |
Target: 5'- ---cGUGCAGGGccccGCacGCCAgGGCGUCa -3' miRNA: 3'- uguuCAUGUUUU----UGa-CGGUgUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 13398 | 1.1 | 0.011641 |
Target: 5'- cACAAGUACAAAAACUGCCACAGCGUCc -3' miRNA: 3'- -UGUUCAUGUUUUUGACGGUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 16514 | 0.66 | 0.998992 |
Target: 5'- gGCAuAGUACcAGGGCUGCaC-CAGCGa- -3' miRNA: 3'- -UGU-UCAUGuUUUUGACG-GuGUCGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 18679 | 0.66 | 0.998146 |
Target: 5'- aGCAAGaUugGAAAggGCUGCacccucguCAUGGCGUCu -3' miRNA: 3'- -UGUUC-AugUUUU--UGACG--------GUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 26458 | 0.68 | 0.98974 |
Target: 5'- gGCGAGgcCAccgggcagagguucGGAACUGCgACAGCaGUCc -3' miRNA: 3'- -UGUUCauGU--------------UUUUGACGgUGUCG-CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 29156 | 0.76 | 0.791348 |
Target: 5'- -gGAGUGCAAAAGauugugcUUGCCGCAGCGa- -3' miRNA: 3'- ugUUCAUGUUUUU-------GACGGUGUCGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 35109 | 0.67 | 0.996154 |
Target: 5'- aGCAGGUACGuguAC-GCgGCAGUGUg -3' miRNA: 3'- -UGUUCAUGUuuuUGaCGgUGUCGCAg -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 36584 | 0.7 | 0.978546 |
Target: 5'- uGCAGGUGCGGAaaggccauGACcgagGCCGcCAGgGUCg -3' miRNA: 3'- -UGUUCAUGUUU--------UUGa---CGGU-GUCgCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 44618 | 0.74 | 0.889881 |
Target: 5'- -aGAGgcugGCAuAGACUGCUgggACAGCGUCc -3' miRNA: 3'- ugUUCa---UGUuUUUGACGG---UGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 44763 | 0.66 | 0.998992 |
Target: 5'- cCGAGUAgAGGAcGCUGUCcCAGCaGUCu -3' miRNA: 3'- uGUUCAUgUUUU-UGACGGuGUCG-CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 44836 | 0.66 | 0.998757 |
Target: 5'- aGCAguGGUGCAAAAuCUcUCACGGgGUCu -3' miRNA: 3'- -UGU--UCAUGUUUUuGAcGGUGUCgCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 51081 | 0.68 | 0.990168 |
Target: 5'- gGCAAGgGCAuAGACggGCCAUAGggaGUCa -3' miRNA: 3'- -UGUUCaUGUuUUUGa-CGGUGUCg--CAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 54775 | 0.69 | 0.985212 |
Target: 5'- gACAGGUACuuuGAGCagUGCCugGGCa-- -3' miRNA: 3'- -UGUUCAUGuu-UUUG--ACGGugUCGcag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 56901 | 0.67 | 0.997299 |
Target: 5'- aGCAGGcGCAg-----GCCGCGGUGUCu -3' miRNA: 3'- -UGUUCaUGUuuuugaCGGUGUCGCAG- -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 66128 | 0.73 | 0.911068 |
Target: 5'- -aGAGUGugaAAAGAUUGCCGCGGCGg- -3' miRNA: 3'- ugUUCAUg--UUUUUGACGGUGUCGCag -5' |
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27037 | 3' | -47 | NC_005832.1 | + | 66320 | 0.75 | 0.840191 |
Target: 5'- -gAGGUACGAGAACgucCCGCAGcCGUCu -3' miRNA: 3'- ugUUCAUGUUUUUGac-GGUGUC-GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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