miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27044 5' -50.1 NC_005832.1 + 84529 0.66 0.989042
Target:  5'- aCUCUGAGAcuGccucGGCcaacgccgcugccauGGCCUCgUCCCu -3'
miRNA:   3'- -GAGACUUUuuC----UCGu--------------UCGGAGgAGGG- -5'
27044 5' -50.1 NC_005832.1 + 47630 0.66 0.988894
Target:  5'- -aCUGGGAGGGcgucguGGCAguGGaCCUgCUCCCu -3'
miRNA:   3'- gaGACUUUUUC------UCGU--UC-GGAgGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 92066 0.66 0.988894
Target:  5'- gCUCUGGu---GAGUGAGCCUCUcgUCg- -3'
miRNA:   3'- -GAGACUuuuuCUCGUUCGGAGG--AGgg -5'
27044 5' -50.1 NC_005832.1 + 97100 0.66 0.988894
Target:  5'- cCUCaGAcgcccuGGAGCAGGCCgCCgcgguggCCCu -3'
miRNA:   3'- -GAGaCUuuu---UCUCGUUCGGaGGa------GGG- -5'
27044 5' -50.1 NC_005832.1 + 87495 0.66 0.988894
Target:  5'- ---cGAGGAccAGGGC-AGCgUCCUCCa -3'
miRNA:   3'- gagaCUUUU--UCUCGuUCGgAGGAGGg -5'
27044 5' -50.1 NC_005832.1 + 11013 0.66 0.988894
Target:  5'- gUCaGggGGAGGGUGAGCUaCCUCa- -3'
miRNA:   3'- gAGaCuuUUUCUCGUUCGGaGGAGgg -5'
27044 5' -50.1 NC_005832.1 + 15630 0.66 0.988592
Target:  5'- aCUCUGcucggugucGGAGCAGacgauGCgCUCCUCCg -3'
miRNA:   3'- -GAGACuuuu-----UCUCGUU-----CG-GAGGAGGg -5'
27044 5' -50.1 NC_005832.1 + 66281 0.66 0.987322
Target:  5'- gUCUGAcuAuaugugugucAG-GCAgauGGCCUCCUuCCCg -3'
miRNA:   3'- gAGACUuuU----------UCuCGU---UCGGAGGA-GGG- -5'
27044 5' -50.1 NC_005832.1 + 76215 0.66 0.987322
Target:  5'- uCUCUGAAGAAGGuuuaCAAGaCUUCCUUUg -3'
miRNA:   3'- -GAGACUUUUUCUc---GUUC-GGAGGAGGg -5'
27044 5' -50.1 NC_005832.1 + 8997 0.66 0.987156
Target:  5'- uUCUGGGuccaaaacAGGAaccgccuGCAGGCCUCCUUgCu -3'
miRNA:   3'- gAGACUUu-------UUCU-------CGUUCGGAGGAGgG- -5'
27044 5' -50.1 NC_005832.1 + 92532 0.66 0.985584
Target:  5'- gCUCUG------GGCu-GCCUCCUCCUc -3'
miRNA:   3'- -GAGACuuuuucUCGuuCGGAGGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 90915 0.66 0.985584
Target:  5'- aUCUcGGccGAGGGCGGGCC-CCUCa- -3'
miRNA:   3'- gAGA-CUuuUUCUCGUUCGGaGGAGgg -5'
27044 5' -50.1 NC_005832.1 + 43015 0.66 0.985584
Target:  5'- ---aGAAGGGGGGcCGAGCCUCUUgacugUCCa -3'
miRNA:   3'- gagaCUUUUUCUC-GUUCGGAGGA-----GGG- -5'
27044 5' -50.1 NC_005832.1 + 53927 0.66 0.985584
Target:  5'- ---cGAAGGGGAcGUAGGCCuuUCC-CCCg -3'
miRNA:   3'- gagaCUUUUUCU-CGUUCGG--AGGaGGG- -5'
27044 5' -50.1 NC_005832.1 + 66382 0.66 0.985584
Target:  5'- cCUUgaggGGAugGGGGCuGGCggCCUCCCu -3'
miRNA:   3'- -GAGa---CUUuuUCUCGuUCGgaGGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 31164 0.66 0.98367
Target:  5'- -gCUGgAAGGAGGGUGGuGCCUgCUCCg -3'
miRNA:   3'- gaGAC-UUUUUCUCGUU-CGGAgGAGGg -5'
27044 5' -50.1 NC_005832.1 + 32180 0.66 0.981569
Target:  5'- gUCUGGGAuuGGGCucccucaggacGGCUgacCCUCCCu -3'
miRNA:   3'- gAGACUUUuuCUCGu----------UCGGa--GGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 94339 0.66 0.981569
Target:  5'- cCUUUGuuggcGGAAAGAG--GGCCUCCcagCCCg -3'
miRNA:   3'- -GAGAC-----UUUUUCUCguUCGGAGGa--GGG- -5'
27044 5' -50.1 NC_005832.1 + 5912 0.67 0.979271
Target:  5'- uUCgacggGGAcGAGGGCAA-CCUcuaCCUCCCg -3'
miRNA:   3'- gAGa----CUUuUUCUCGUUcGGA---GGAGGG- -5'
27044 5' -50.1 NC_005832.1 + 60055 0.67 0.976768
Target:  5'- ---gGAGAGGGAcGUAAGUCUCUgCCCu -3'
miRNA:   3'- gagaCUUUUUCU-CGUUCGGAGGaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.