miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27045 5' -56.8 NC_005832.1 + 18129 0.66 0.784332
Target:  5'- ---nCAGCAGCAGCAACGCCn----- -3'
miRNA:   3'- acacGUCGUCGUCGUUGCGGgacacg -5'
27045 5' -56.8 NC_005832.1 + 82416 0.66 0.784332
Target:  5'- gGUGCAGCuggugcuGguGCAGCugGUgCUGgUGCa -3'
miRNA:   3'- aCACGUCGu------CguCGUUG--CGgGAC-ACG- -5'
27045 5' -56.8 NC_005832.1 + 18171 0.66 0.784332
Target:  5'- ---nCAGCAGCAGCAGCGCCn----- -3'
miRNA:   3'- acacGUCGUCGUCGUUGCGGgacacg -5'
27045 5' -56.8 NC_005832.1 + 18087 0.66 0.784332
Target:  5'- ---nCAGCAGCAGCAACGCCn----- -3'
miRNA:   3'- acacGUCGUCGUCGUUGCGGgacacg -5'
27045 5' -56.8 NC_005832.1 + 95689 0.66 0.76495
Target:  5'- --gGCAGCGGCcGCGGaggcuaGCCC-GUGUc -3'
miRNA:   3'- acaCGUCGUCGuCGUUg-----CGGGaCACG- -5'
27045 5' -56.8 NC_005832.1 + 16925 0.66 0.755064
Target:  5'- cGUGgAGCAGguGCAGgcCGCCCc---- -3'
miRNA:   3'- aCACgUCGUCguCGUU--GCGGGacacg -5'
27045 5' -56.8 NC_005832.1 + 52935 0.66 0.74506
Target:  5'- -cUGCaAGCcccugGGCAGCAugGCCCcgGgacGCa -3'
miRNA:   3'- acACG-UCG-----UCGUCGUugCGGGa-Ca--CG- -5'
27045 5' -56.8 NC_005832.1 + 31880 0.66 0.74506
Target:  5'- -aUGCAGCAGCAagggauGC-ACGCCaggGUGa -3'
miRNA:   3'- acACGUCGUCGU------CGuUGCGGga-CACg -5'
27045 5' -56.8 NC_005832.1 + 55861 0.66 0.73495
Target:  5'- aGUGgaccCAGCAGCAGCAAacUGCCCc---- -3'
miRNA:   3'- aCAC----GUCGUCGUCGUU--GCGGGacacg -5'
27045 5' -56.8 NC_005832.1 + 13862 0.66 0.73495
Target:  5'- --aGUAGCAGUcgAGCuccAGCGCCCUgcccGUGUc -3'
miRNA:   3'- acaCGUCGUCG--UCG---UUGCGGGA----CACG- -5'
27045 5' -56.8 NC_005832.1 + 2129 0.66 0.73495
Target:  5'- cGUGguGCuGGCccccauauucGGCGAgGCCCUGUcgGUg -3'
miRNA:   3'- aCACguCG-UCG----------UCGUUgCGGGACA--CG- -5'
27045 5' -56.8 NC_005832.1 + 86458 0.66 0.73495
Target:  5'- --cGCAGCAGCaagaggAGCAGcCGCCUgaggaggcugGUGUg -3'
miRNA:   3'- acaCGUCGUCG------UCGUU-GCGGGa---------CACG- -5'
27045 5' -56.8 NC_005832.1 + 6975 0.67 0.724744
Target:  5'- gGUGCAGUuuguuacggcgGGCacGGCAugGaCCCUcagagGUGCu -3'
miRNA:   3'- aCACGUCG-----------UCG--UCGUugC-GGGA-----CACG- -5'
27045 5' -56.8 NC_005832.1 + 53648 0.67 0.714452
Target:  5'- cGUGUAGC-GCGGC--CGCCg-GUGCc -3'
miRNA:   3'- aCACGUCGuCGUCGuuGCGGgaCACG- -5'
27045 5' -56.8 NC_005832.1 + 95932 0.67 0.704085
Target:  5'- --cGCGGCcagGGCAGCAA-GCCCgaggGCa -3'
miRNA:   3'- acaCGUCG---UCGUCGUUgCGGGaca-CG- -5'
27045 5' -56.8 NC_005832.1 + 82491 0.67 0.693652
Target:  5'- gGUGCAGCuGguGCuguauCGgCCUGuUGUg -3'
miRNA:   3'- aCACGUCGuCguCGuu---GCgGGAC-ACG- -5'
27045 5' -56.8 NC_005832.1 + 7787 0.68 0.640855
Target:  5'- gGUGCAGguCGGCGGC-ACuCCCgGUGUa -3'
miRNA:   3'- aCACGUC--GUCGUCGuUGcGGGaCACG- -5'
27045 5' -56.8 NC_005832.1 + 4481 0.68 0.619619
Target:  5'- -uUGCG--GGCAGCGACGUCUcGUGCu -3'
miRNA:   3'- acACGUcgUCGUCGUUGCGGGaCACG- -5'
27045 5' -56.8 NC_005832.1 + 7289 0.69 0.612193
Target:  5'- --cGCGGCGGCGGUccuguguccgggagaGGCuguggguGUCCUGUGCg -3'
miRNA:   3'- acaCGUCGUCGUCG---------------UUG-------CGGGACACG- -5'
27045 5' -56.8 NC_005832.1 + 50412 0.69 0.592083
Target:  5'- gUGUGCAGggacaCGGCGGCAgagagguggcccucgACGCCCgacucUGCu -3'
miRNA:   3'- -ACACGUC-----GUCGUCGU---------------UGCGGGac---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.