Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27045 | 5' | -56.8 | NC_005832.1 | + | 29563 | 0.69 | 0.566849 |
Target: 5'- --gGCAGgAGCAGgguccCGGCGCUCUcGUGCg -3' miRNA: 3'- acaCGUCgUCGUC-----GUUGCGGGA-CACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 31880 | 0.66 | 0.74506 |
Target: 5'- -aUGCAGCAGCAagggauGC-ACGCCaggGUGa -3' miRNA: 3'- acACGUCGUCGU------CGuUGCGGga-CACg -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 35870 | 0.69 | 0.556413 |
Target: 5'- --aGCAGCAGCAGCcccCGUCUUcUGCc -3' miRNA: 3'- acaCGUCGUCGUCGuu-GCGGGAcACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 50412 | 0.69 | 0.592083 |
Target: 5'- gUGUGCAGggacaCGGCGGCAgagagguggcccucgACGCCCgacucUGCu -3' miRNA: 3'- -ACACGUC-----GUCGUCGU---------------UGCGGGac---ACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 52935 | 0.66 | 0.74506 |
Target: 5'- -cUGCaAGCcccugGGCAGCAugGCCCcgGgacGCa -3' miRNA: 3'- acACG-UCG-----UCGUCGUugCGGGa-Ca--CG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 53648 | 0.67 | 0.714452 |
Target: 5'- cGUGUAGC-GCGGC--CGCCg-GUGCc -3' miRNA: 3'- aCACGUCGuCGUCGuuGCGGgaCACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 55861 | 0.66 | 0.73495 |
Target: 5'- aGUGgaccCAGCAGCAGCAAacUGCCCc---- -3' miRNA: 3'- aCAC----GUCGUCGUCGUU--GCGGGacacg -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 75897 | 0.74 | 0.311223 |
Target: 5'- aGUGCAGCAGuCAGggccacCAGgGCCCUG-GCc -3' miRNA: 3'- aCACGUCGUC-GUC------GUUgCGGGACaCG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 76274 | 0.72 | 0.437225 |
Target: 5'- --gGCGGCAGagaGGCAGagGCaCCUGUGCc -3' miRNA: 3'- acaCGUCGUCg--UCGUUg-CG-GGACACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 82416 | 0.66 | 0.784332 |
Target: 5'- gGUGCAGCuggugcuGguGCAGCugGUgCUGgUGCa -3' miRNA: 3'- aCACGUCGu------CguCGUUG--CGgGAC-ACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 82491 | 0.67 | 0.693652 |
Target: 5'- gGUGCAGCuGguGCuguauCGgCCUGuUGUg -3' miRNA: 3'- aCACGUCGuCguCGuu---GCgGGAC-ACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 86458 | 0.66 | 0.73495 |
Target: 5'- --cGCAGCAGCaagaggAGCAGcCGCCUgaggaggcugGUGUg -3' miRNA: 3'- acaCGUCGUCG------UCGUU-GCGGGa---------CACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 86517 | 0.7 | 0.515297 |
Target: 5'- uUGUGCGGCGGCcaagaacgaAGCcuugGGCGCCUUcuuugcgacugGUGCa -3' miRNA: 3'- -ACACGUCGUCG---------UCG----UUGCGGGA-----------CACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 95689 | 0.66 | 0.76495 |
Target: 5'- --gGCAGCGGCcGCGGaggcuaGCCC-GUGUc -3' miRNA: 3'- acaCGUCGUCGuCGUUg-----CGGGaCACG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 95932 | 0.67 | 0.704085 |
Target: 5'- --cGCGGCcagGGCAGCAA-GCCCgaggGCa -3' miRNA: 3'- acaCGUCG---UCGUCGUUgCGGGaca-CG- -5' |
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27045 | 5' | -56.8 | NC_005832.1 | + | 102051 | 0.69 | 0.556413 |
Target: 5'- uUGUG-AGCAGCGGCAugGCUCa---- -3' miRNA: 3'- -ACACgUCGUCGUCGUugCGGGacacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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