miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27049 5' -59.9 NC_005832.1 + 10721 0.66 0.684773
Target:  5'- uUGCUaaaGauguuGCGgUCCCCGGcGUCCUGgUCCc -3'
miRNA:   3'- -ACGGg--C-----UGUgAGGGGUC-CAGGAC-AGG- -5'
27049 5' -59.9 NC_005832.1 + 49083 0.66 0.684773
Target:  5'- gUGCCCuAUuuggaCCCAGGUCCUgGUUCu -3'
miRNA:   3'- -ACGGGcUGugag-GGGUCCAGGA-CAGG- -5'
27049 5' -59.9 NC_005832.1 + 97196 0.66 0.684773
Target:  5'- aGCUCGACagGCUCCUggagCAGGccucggCCgUGUCCu -3'
miRNA:   3'- aCGGGCUG--UGAGGG----GUCCa-----GG-ACAGG- -5'
27049 5' -59.9 NC_005832.1 + 96923 0.66 0.674696
Target:  5'- aGCCCGACAUggucugCUUgAGG-CC-GUCCa -3'
miRNA:   3'- aCGGGCUGUGa-----GGGgUCCaGGaCAGG- -5'
27049 5' -59.9 NC_005832.1 + 48361 0.66 0.674696
Target:  5'- cGCCaccaGGgGCUCCUC-GGUCCccuuUGUCUg -3'
miRNA:   3'- aCGGg---CUgUGAGGGGuCCAGG----ACAGG- -5'
27049 5' -59.9 NC_005832.1 + 10261 0.66 0.674696
Target:  5'- gGCaggGACAC-CCCCAGGUCCa---- -3'
miRNA:   3'- aCGgg-CUGUGaGGGGUCCAGGacagg -5'
27049 5' -59.9 NC_005832.1 + 54135 0.66 0.664584
Target:  5'- -uCCCGACGCccugCCCgAGGaCCUGUa- -3'
miRNA:   3'- acGGGCUGUGa---GGGgUCCaGGACAgg -5'
27049 5' -59.9 NC_005832.1 + 44658 0.66 0.663571
Target:  5'- gGCUCGACgggcaggagGCUCCCCAcgaagaucuuuauGGcgCCUuGUCCc -3'
miRNA:   3'- aCGGGCUG---------UGAGGGGU-------------CCa-GGA-CAGG- -5'
27049 5' -59.9 NC_005832.1 + 15814 0.66 0.654447
Target:  5'- cUGCCgggagaGGCGCUCCaagAGGcCCUGUCg -3'
miRNA:   3'- -ACGGg-----CUGUGAGGgg-UCCaGGACAGg -5'
27049 5' -59.9 NC_005832.1 + 91955 0.67 0.617863
Target:  5'- cUGCCuggccucagaaauguCGAUggGCUCCCCGGacucuaUCCUGUCUg -3'
miRNA:   3'- -ACGG---------------GCUG--UGAGGGGUCc-----AGGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 39720 0.67 0.613801
Target:  5'- -aUCCGGCcuCUCCUgCAGGUCCccuggGUCCu -3'
miRNA:   3'- acGGGCUGu-GAGGG-GUCCAGGa----CAGG- -5'
27049 5' -59.9 NC_005832.1 + 10624 0.67 0.613801
Target:  5'- cUGCCCGGCcaucCUCCUaaccugacuCGGGuUCCUGgccUCCg -3'
miRNA:   3'- -ACGGGCUGu---GAGGG---------GUCC-AGGAC---AGG- -5'
27049 5' -59.9 NC_005832.1 + 79066 0.67 0.613801
Target:  5'- aGCCUGACGCugacaacccUCCCCaucuccaccagGGGUCUaccucuuagGUCCa -3'
miRNA:   3'- aCGGGCUGUG---------AGGGG-----------UCCAGGa--------CAGG- -5'
27049 5' -59.9 NC_005832.1 + 5940 0.67 0.603654
Target:  5'- -uCCCGcAgGgUCCCCAGG-CCagGUCCg -3'
miRNA:   3'- acGGGC-UgUgAGGGGUCCaGGa-CAGG- -5'
27049 5' -59.9 NC_005832.1 + 97334 0.67 0.593529
Target:  5'- cGgCCGAgGCcugCUCCAGGagCCUGUCg -3'
miRNA:   3'- aCgGGCUgUGa--GGGGUCCa-GGACAGg -5'
27049 5' -59.9 NC_005832.1 + 5151 0.67 0.587467
Target:  5'- -aCCUGACGugagaucccuuucccCUgCCCAGGacCCUGUCCa -3'
miRNA:   3'- acGGGCUGU---------------GAgGGGUCCa-GGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 65724 0.67 0.583431
Target:  5'- gGuCuuGACGaauCUCCCCccggcgggcaGGGUCCUGcCCg -3'
miRNA:   3'- aC-GggCUGU---GAGGGG----------UCCAGGACaGG- -5'
27049 5' -59.9 NC_005832.1 + 81573 0.67 0.583431
Target:  5'- cGCCCGACucucucacaUCCCCGuaagaacUCUUGUCCa -3'
miRNA:   3'- aCGGGCUGug-------AGGGGUcc-----AGGACAGG- -5'
27049 5' -59.9 NC_005832.1 + 43419 0.67 0.583431
Target:  5'- aGCCUGGC-CUCCCgcacgaaccccaCGGGgucaCCUGUCa -3'
miRNA:   3'- aCGGGCUGuGAGGG------------GUCCa---GGACAGg -5'
27049 5' -59.9 NC_005832.1 + 95689 0.67 0.583431
Target:  5'- gGCCCuGaACACgugcccUCCCCucuugauGGUCCUG-CCg -3'
miRNA:   3'- aCGGG-C-UGUG------AGGGGu------CCAGGACaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.