miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 3' -51.3 NC_005832.1 + 36165 1.15 0.002729
Target:  5'- cCCUCGACGCACUUUAACGGCACCAGCu -3'
miRNA:   3'- -GGAGCUGCGUGAAAUUGCCGUGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 49785 0.78 0.460527
Target:  5'- aCC-CGACGCACUUUAAgGGgUugCAGUa -3'
miRNA:   3'- -GGaGCUGCGUGAAAUUgCC-GugGUCG- -5'
27057 3' -51.3 NC_005832.1 + 41347 0.73 0.719532
Target:  5'- gCCUCGACGCAaaugccccgAGgGGCauaaugGCCAGCu -3'
miRNA:   3'- -GGAGCUGCGUgaaa-----UUgCCG------UGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 33584 0.73 0.762314
Target:  5'- aCCUgGACGCcCUgccuuUGGcCGCCAGCa -3'
miRNA:   3'- -GGAgCUGCGuGAaauu-GCC-GUGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 89518 0.72 0.780011
Target:  5'- aCUUGACGCGCUcguucuguauGCaGGC-CCAGCa -3'
miRNA:   3'- gGAGCUGCGUGAaau-------UG-CCGuGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 90740 0.71 0.845513
Target:  5'- gCCUUGGcCGCAgUc--ACGGCGuCCAGCu -3'
miRNA:   3'- -GGAGCU-GCGUgAaauUGCCGU-GGUCG- -5'
27057 3' -51.3 NC_005832.1 + 104926 0.71 0.853813
Target:  5'- --gUGGgGCACUUUAGCGGCAUagAGUa -3'
miRNA:   3'- ggaGCUgCGUGAAAUUGCCGUGg-UCG- -5'
27057 3' -51.3 NC_005832.1 + 50560 0.7 0.869745
Target:  5'- gCCUUGACGcCGCUgaGACuGGaC-CCAGCg -3'
miRNA:   3'- -GGAGCUGC-GUGAaaUUG-CC-GuGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 7746 0.7 0.877363
Target:  5'- gCUUGAaGCAC-UUGACGGgAuCCAGCu -3'
miRNA:   3'- gGAGCUgCGUGaAAUUGCCgU-GGUCG- -5'
27057 3' -51.3 NC_005832.1 + 19771 0.69 0.898757
Target:  5'- cCCcCGAgGCGCUUUccccCGGCGCCcGUg -3'
miRNA:   3'- -GGaGCUgCGUGAAAuu--GCCGUGGuCG- -5'
27057 3' -51.3 NC_005832.1 + 65400 0.69 0.905386
Target:  5'- aCUCcuuCGCAgg--GACGGCACCAGg -3'
miRNA:   3'- gGAGcu-GCGUgaaaUUGCCGUGGUCg -5'
27057 3' -51.3 NC_005832.1 + 20756 0.69 0.905387
Target:  5'- -gUCGACGUACaugUUGGCcagGGCugUAGCc -3'
miRNA:   3'- ggAGCUGCGUGa--AAUUG---CCGugGUCG- -5'
27057 3' -51.3 NC_005832.1 + 1574 0.69 0.911758
Target:  5'- aUCUCGcCGUGCa-UGACGGCugUGGCc -3'
miRNA:   3'- -GGAGCuGCGUGaaAUUGCCGugGUCG- -5'
27057 3' -51.3 NC_005832.1 + 13024 0.68 0.944506
Target:  5'- gUCUUGACGagccuCUcggaGACGGCuGCCAGCu -3'
miRNA:   3'- -GGAGCUGCgu---GAaa--UUGCCG-UGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 87649 0.68 0.949054
Target:  5'- cCCgUCGugGUAC----AUGGCcGCCAGCc -3'
miRNA:   3'- -GG-AGCugCGUGaaauUGCCG-UGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 78835 0.68 0.949054
Target:  5'- gCCUUGaagaagacuGCGC-CUUUGGCGugagcggucuGCGCCGGCc -3'
miRNA:   3'- -GGAGC---------UGCGuGAAAUUGC----------CGUGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 81067 0.68 0.952085
Target:  5'- gCCUCcuGGCGguCUuuacgucggggaccUUGACGGC-CCAGUc -3'
miRNA:   3'- -GGAG--CUGCguGA--------------AAUUGCCGuGGUCG- -5'
27057 3' -51.3 NC_005832.1 + 95402 0.68 0.953346
Target:  5'- aCCUCGAaGCugUUUGGgGGUcuggaCGGCg -3'
miRNA:   3'- -GGAGCUgCGugAAAUUgCCGug---GUCG- -5'
27057 3' -51.3 NC_005832.1 + 1778 0.67 0.956202
Target:  5'- cCCUCGGCgacuggcuggaGCACUUUuccccuuccgaggaGACGGUGgacaacugccuCCAGCa -3'
miRNA:   3'- -GGAGCUG-----------CGUGAAA--------------UUGCCGU-----------GGUCG- -5'
27057 3' -51.3 NC_005832.1 + 10962 0.67 0.956996
Target:  5'- aCCUUugccgggGAgGUGCUggGA-GGCACCGGCa -3'
miRNA:   3'- -GGAG-------CUgCGUGAaaUUgCCGUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.