Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27057 | 3' | -51.3 | NC_005832.1 | + | 1574 | 0.69 | 0.911758 |
Target: 5'- aUCUCGcCGUGCa-UGACGGCugUGGCc -3' miRNA: 3'- -GGAGCuGCGUGaaAUUGCCGugGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 1778 | 0.67 | 0.956202 |
Target: 5'- cCCUCGGCgacuggcuggaGCACUUUuccccuuccgaggaGACGGUGgacaacugccuCCAGCa -3' miRNA: 3'- -GGAGCUG-----------CGUGAAA--------------UUGCCGU-----------GGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 2264 | 0.66 | 0.974024 |
Target: 5'- gCCUCGcCGaa---UAugGGgGCCAGCa -3' miRNA: 3'- -GGAGCuGCgugaaAUugCCgUGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 7746 | 0.7 | 0.877363 |
Target: 5'- gCUUGAaGCAC-UUGACGGgAuCCAGCu -3' miRNA: 3'- gGAGCUgCGUGaAAUUGCCgU-GGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 10962 | 0.67 | 0.956996 |
Target: 5'- aCCUUugccgggGAgGUGCUggGA-GGCACCGGCa -3' miRNA: 3'- -GGAG-------CUgCGUGAaaUUgCCGUGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 11911 | 0.66 | 0.983458 |
Target: 5'- cCCUUGAaggcgaGCACggUUAGCacgGGUACCgaAGCg -3' miRNA: 3'- -GGAGCUg-----CGUGa-AAUUG---CCGUGG--UCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 13024 | 0.68 | 0.944506 |
Target: 5'- gUCUUGACGagccuCUcggaGACGGCuGCCAGCu -3' miRNA: 3'- -GGAGCUGCgu---GAaa--UUGCCG-UGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 19771 | 0.69 | 0.898757 |
Target: 5'- cCCcCGAgGCGCUUUccccCGGCGCCcGUg -3' miRNA: 3'- -GGaGCUgCGUGAAAuu--GCCGUGGuCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 20756 | 0.69 | 0.905387 |
Target: 5'- -gUCGACGUACaugUUGGCcagGGCugUAGCc -3' miRNA: 3'- ggAGCUGCGUGa--AAUUG---CCGugGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 23602 | 0.66 | 0.976682 |
Target: 5'- gCCUUGAaGgACUUUAggucgggcaggGCGGCguaaggcagGCCGGCg -3' miRNA: 3'- -GGAGCUgCgUGAAAU-----------UGCCG---------UGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 31199 | 0.66 | 0.979134 |
Target: 5'- gCCUUGACGCACcugacAUGGCagaACCAc- -3' miRNA: 3'- -GGAGCUGCGUGaaau-UGCCG---UGGUcg -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 33584 | 0.73 | 0.762314 |
Target: 5'- aCCUgGACGCcCUgccuuUGGcCGCCAGCa -3' miRNA: 3'- -GGAgCUGCGuGAaauu-GCC-GUGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 36165 | 1.15 | 0.002729 |
Target: 5'- cCCUCGACGCACUUUAACGGCACCAGCu -3' miRNA: 3'- -GGAGCUGCGUGAAAUUGCCGUGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 41347 | 0.73 | 0.719532 |
Target: 5'- gCCUCGACGCAaaugccccgAGgGGCauaaugGCCAGCu -3' miRNA: 3'- -GGAGCUGCGUgaaa-----UUgCCG------UGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 41424 | 0.66 | 0.976682 |
Target: 5'- aCCgagGGCGC-CUcccUGACGGCGgCGGCc -3' miRNA: 3'- -GGag-CUGCGuGAa--AUUGCCGUgGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 45592 | 0.67 | 0.961185 |
Target: 5'- gUCUUGACGUAgUgcu-CGGUGuCCAGCu -3' miRNA: 3'- -GGAGCUGCGUgAaauuGCCGU-GGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 45861 | 0.67 | 0.971153 |
Target: 5'- ---gGugGCA----GACGGCACCAGg -3' miRNA: 3'- ggagCugCGUgaaaUUGCCGUGGUCg -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 49785 | 0.78 | 0.460527 |
Target: 5'- aCC-CGACGCACUUUAAgGGgUugCAGUa -3' miRNA: 3'- -GGaGCUGCGUGAAAUUgCC-GugGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 50560 | 0.7 | 0.869745 |
Target: 5'- gCCUUGACGcCGCUgaGACuGGaC-CCAGCg -3' miRNA: 3'- -GGAGCUGC-GUGAaaUUG-CC-GuGGUCG- -5' |
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27057 | 3' | -51.3 | NC_005832.1 | + | 65400 | 0.69 | 0.905386 |
Target: 5'- aCUCcuuCGCAgg--GACGGCACCAGg -3' miRNA: 3'- gGAGcu-GCGUgaaaUUGCCGUGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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