Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27057 | 5' | -57.7 | NC_005832.1 | + | 44536 | 0.72 | 0.388802 |
Target: 5'- cGGCgUgcaagCUGGGCAagacCUACGACGCCaCCg -3' miRNA: 3'- uCCGgGa----GAUCCGU----GAUGUUGCGG-GG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 72576 | 0.72 | 0.388802 |
Target: 5'- gGGGCCC-CUGGGCuu--CAGgGUCCCg -3' miRNA: 3'- -UCCGGGaGAUCCGugauGUUgCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 15799 | 0.71 | 0.483564 |
Target: 5'- aAGGCUCUCUugaagcugccgggagAGGCGCUccaaGAgGCCCUg -3' miRNA: 3'- -UCCGGGAGA---------------UCCGUGAug--UUgCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 28086 | 0.7 | 0.515911 |
Target: 5'- gAGGCCCUUUgccguggagguugcGGGCggagACUACAA-GUCCCu -3' miRNA: 3'- -UCCGGGAGA--------------UCCG----UGAUGUUgCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 1344 | 0.7 | 0.528894 |
Target: 5'- uGGUCCUCacGGCAacccCUACAGgagUGCCCCu -3' miRNA: 3'- uCCGGGAGauCCGU----GAUGUU---GCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 32691 | 0.68 | 0.631699 |
Target: 5'- cAGGCCCgagaCcAGGCACcACGAccguaccacCGCCUCg -3' miRNA: 3'- -UCCGGGa---GaUCCGUGaUGUU---------GCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 94819 | 0.68 | 0.621291 |
Target: 5'- gAGGaCCCugUCUAGGCuaaaguCUGCGGC-CUCCa -3' miRNA: 3'- -UCC-GGG--AGAUCCGu-----GAUGUUGcGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 47747 | 0.68 | 0.621291 |
Target: 5'- aGGGaCCUCUcguugGGGUACUGCuGCacgacguaGCCCCu -3' miRNA: 3'- -UCCgGGAGA-----UCCGUGAUGuUG--------CGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 101767 | 0.68 | 0.600507 |
Target: 5'- cGGCCCUCaaaaaaaaGUACcacgACAAgGCCCCg -3' miRNA: 3'- uCCGGGAGauc-----CGUGa---UGUUgCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 97130 | 0.69 | 0.559286 |
Target: 5'- uGGCCCUgaGGGCaaagGCUGCGgcagACGCCg- -3' miRNA: 3'- uCCGGGAgaUCCG----UGAUGU----UGCGGgg -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 32499 | 0.69 | 0.549095 |
Target: 5'- aGGGCCCUacgcGGGCGCa--AugGCUCCc -3' miRNA: 3'- -UCCGGGAga--UCCGUGaugUugCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 97404 | 0.71 | 0.457841 |
Target: 5'- cAGGgCCUCgAGGCcggccaggcuggcgACUACGGCGUCCa -3' miRNA: 3'- -UCCgGGAGaUCCG--------------UGAUGUUGCGGGg -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 81289 | 0.72 | 0.397378 |
Target: 5'- gGGGCCac---GGCACcGCAAgGCCCCg -3' miRNA: 3'- -UCCGGgagauCCGUGaUGUUgCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 91515 | 0.72 | 0.388802 |
Target: 5'- cAGGUCCguguucUUUAGGCGCUACGAcuuuacCGCCgCCa -3' miRNA: 3'- -UCCGGG------AGAUCCGUGAUGUU------GCGG-GG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 47184 | 0.73 | 0.363813 |
Target: 5'- uGGaGCCCUCgcccGGCAuCUACGACaacgugguGCCCCu -3' miRNA: 3'- -UC-CGGGAGau--CCGU-GAUGUUG--------CGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 1030 | 0.74 | 0.295718 |
Target: 5'- cGGCCCcugCUacgccGGGgGCUGCAGCGCCUUc -3' miRNA: 3'- uCCGGGa--GA-----UCCgUGAUGUUGCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 52930 | 0.77 | 0.199821 |
Target: 5'- -aGCCC-CUGGGCA--GCAugGCCCCg -3' miRNA: 3'- ucCGGGaGAUCCGUgaUGUugCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 72878 | 0.78 | 0.174588 |
Target: 5'- aGGGCCCUCUGGGCccCUGggacccgucuugccCAACGgCCCg -3' miRNA: 3'- -UCCGGGAGAUCCGu-GAU--------------GUUGCgGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 72980 | 0.85 | 0.060483 |
Target: 5'- uGGGCCCUgaGGGCGCU-CAGgGCCCCa -3' miRNA: 3'- -UCCGGGAgaUCCGUGAuGUUgCGGGG- -5' |
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27057 | 5' | -57.7 | NC_005832.1 | + | 18098 | 0.66 | 0.773368 |
Target: 5'- cAGcGCCCUgUGcaGCAgCaGCAACGCCCUg -3' miRNA: 3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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