miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 5' -57.7 NC_005832.1 + 67085 0.67 0.683576
Target:  5'- gAGGCCCUggAGGcCACUccguACGAgGCCa- -3'
miRNA:   3'- -UCCGGGAgaUCC-GUGA----UGUUgCGGgg -5'
27057 5' -57.7 NC_005832.1 + 94819 0.68 0.621291
Target:  5'- gAGGaCCCugUCUAGGCuaaaguCUGCGGC-CUCCa -3'
miRNA:   3'- -UCC-GGG--AGAUCCGu-----GAUGUUGcGGGG- -5'
27057 5' -57.7 NC_005832.1 + 32691 0.68 0.631699
Target:  5'- cAGGCCCgagaCcAGGCACcACGAccguaccacCGCCUCg -3'
miRNA:   3'- -UCCGGGa---GaUCCGUGaUGUU---------GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 32784 0.68 0.631699
Target:  5'- cAGGCCCgagaCcAGGCACcACGAcugcaccacCGCCUCg -3'
miRNA:   3'- -UCCGGGa---GaUCCGUGaUGUU---------GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 44137 0.68 0.631699
Target:  5'- gAGGUCCcgcGGGaCugUGCGACGCUCUg -3'
miRNA:   3'- -UCCGGGagaUCC-GugAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 52749 0.68 0.642109
Target:  5'- gAGGCCagacAGGUACUGCGucACGCugCCCa -3'
miRNA:   3'- -UCCGGgagaUCCGUGAUGU--UGCG--GGG- -5'
27057 5' -57.7 NC_005832.1 + 499 0.67 0.658743
Target:  5'- gGGGcCCCUgUGGGCcgaguaccacuuuCUGCAccaGCCCCc -3'
miRNA:   3'- -UCC-GGGAgAUCCGu------------GAUGUug-CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 88219 0.67 0.662894
Target:  5'- cAGGCCgCUUUGGGUucgaACUAUgugaggAGCGCCUg -3'
miRNA:   3'- -UCCGG-GAGAUCCG----UGAUG------UUGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 97078 0.67 0.673252
Target:  5'- aAGGCCCaggAGGCcCUGucgaccucaGACGCCCUg -3'
miRNA:   3'- -UCCGGGagaUCCGuGAUg--------UUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 47747 0.68 0.621291
Target:  5'- aGGGaCCUCUcguugGGGUACUGCuGCacgacguaGCCCCu -3'
miRNA:   3'- -UCCgGGAGA-----UCCGUGAUGuUG--------CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 101767 0.68 0.600507
Target:  5'- cGGCCCUCaaaaaaaaGUACcacgACAAgGCCCCg -3'
miRNA:   3'- uCCGGGAGauc-----CGUGa---UGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 97130 0.69 0.559286
Target:  5'- uGGCCCUgaGGGCaaagGCUGCGgcagACGCCg- -3'
miRNA:   3'- uCCGGGAgaUCCG----UGAUGU----UGCGGgg -5'
27057 5' -57.7 NC_005832.1 + 96350 0.75 0.287427
Target:  5'- gAGGCCCUUUccGCACUccgaggagagcuCAGCGCCCUg -3'
miRNA:   3'- -UCCGGGAGAucCGUGAu-----------GUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 103476 0.74 0.295718
Target:  5'- gAGGUCCUCgGGGUccaggACUacGCAACuGCCCCg -3'
miRNA:   3'- -UCCGGGAGaUCCG-----UGA--UGUUG-CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 44536 0.72 0.388802
Target:  5'- cGGCgUgcaagCUGGGCAagacCUACGACGCCaCCg -3'
miRNA:   3'- uCCGgGa----GAUCCGU----GAUGUUGCGG-GG- -5'
27057 5' -57.7 NC_005832.1 + 72576 0.72 0.388802
Target:  5'- gGGGCCC-CUGGGCuu--CAGgGUCCCg -3'
miRNA:   3'- -UCCGGGaGAUCCGugauGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 15799 0.71 0.483564
Target:  5'- aAGGCUCUCUugaagcugccgggagAGGCGCUccaaGAgGCCCUg -3'
miRNA:   3'- -UCCGGGAGA---------------UCCGUGAug--UUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 28086 0.7 0.515911
Target:  5'- gAGGCCCUUUgccguggagguugcGGGCggagACUACAA-GUCCCu -3'
miRNA:   3'- -UCCGGGAGA--------------UCCG----UGAUGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1344 0.7 0.528894
Target:  5'- uGGUCCUCacGGCAacccCUACAGgagUGCCCCu -3'
miRNA:   3'- uCCGGGAGauCCGU----GAUGUU---GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 32499 0.69 0.549095
Target:  5'- aGGGCCCUacgcGGGCGCa--AugGCUCCc -3'
miRNA:   3'- -UCCGGGAga--UCCGUGaugUugCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.