miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 5' -57.7 NC_005832.1 + 499 0.67 0.658743
Target:  5'- gGGGcCCCUgUGGGCcgaguaccacuuuCUGCAccaGCCCCc -3'
miRNA:   3'- -UCC-GGGAgAUCCGu------------GAUGUug-CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 876 0.75 0.282001
Target:  5'- aGGuGCCC-CUgggugugaAGGCGCUGCAGC-CCCCg -3'
miRNA:   3'- -UC-CGGGaGA--------UCCGUGAUGUUGcGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1030 0.74 0.295718
Target:  5'- cGGCCCcugCUacgccGGGgGCUGCAGCGCCUUc -3'
miRNA:   3'- uCCGGGa--GA-----UCCgUGAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1344 0.7 0.528894
Target:  5'- uGGUCCUCacGGCAacccCUACAGgagUGCCCCu -3'
miRNA:   3'- uCCGGGAGauCCGU----GAUGUU---GCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1603 0.67 0.703062
Target:  5'- cAGGCUCUacaggaUGGGggacagagaguucCACcugaggUGCGACGCCCCg -3'
miRNA:   3'- -UCCGGGAg-----AUCC-------------GUG------AUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1804 0.66 0.724337
Target:  5'- cGGUCCUCacgaGCACUACGACuacaCCCu -3'
miRNA:   3'- uCCGGGAGauc-CGUGAUGUUGcg--GGG- -5'
27057 5' -57.7 NC_005832.1 + 2642 0.69 0.559286
Target:  5'- gAGGCCgUC-GGGgGCUcccACAaagugaGCGCCCCc -3'
miRNA:   3'- -UCCGGgAGaUCCgUGA---UGU------UGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 5192 0.66 0.754079
Target:  5'- aAGGCCCU---GGaGC-ACGACGaCCCCg -3'
miRNA:   3'- -UCCGGGAgauCCgUGaUGUUGC-GGGG- -5'
27057 5' -57.7 NC_005832.1 + 5587 0.66 0.724337
Target:  5'- gAGGCCCUCUcacGGGgACcacauggagACGGCGgacggaucuCCCCu -3'
miRNA:   3'- -UCCGGGAGA---UCCgUGa--------UGUUGC---------GGGG- -5'
27057 5' -57.7 NC_005832.1 + 5699 0.67 0.673252
Target:  5'- aGGGCCuccaCUCggaGGGcCugUGCAcCGUCCCg -3'
miRNA:   3'- -UCCGG----GAGa--UCC-GugAUGUuGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 11573 0.67 0.704082
Target:  5'- cGGCCCUCcucauGGCgACgucCGACGCCa- -3'
miRNA:   3'- uCCGGGAGau---CCG-UGau-GUUGCGGgg -5'
27057 5' -57.7 NC_005832.1 + 12949 0.7 0.499131
Target:  5'- aAGGCUggUUCagaUGGGCAUaGCgGACGCCCCa -3'
miRNA:   3'- -UCCGG--GAG---AUCCGUGaUG-UUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 13003 0.66 0.763784
Target:  5'- -cGCCUUC-GGGUucccCUACGcagACGCCCCc -3'
miRNA:   3'- ucCGGGAGaUCCGu---GAUGU---UGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 15799 0.71 0.483564
Target:  5'- aAGGCUCUCUugaagcugccgggagAGGCGCUccaaGAgGCCCUg -3'
miRNA:   3'- -UCCGGGAGA---------------UCCGUGAug--UUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 16462 0.67 0.693856
Target:  5'- gAGGCgacaaCUCUGGGUACacCAcCGCCCa -3'
miRNA:   3'- -UCCGg----GAGAUCCGUGauGUuGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 18098 0.66 0.773368
Target:  5'- cAGcGCCCUgUGcaGCAgCaGCAACGCCCUg -3'
miRNA:   3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 18161 0.66 0.773368
Target:  5'- cAGcGCCCUgUGcaGCAgCaGCAGCGCCCUg -3'
miRNA:   3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 18203 0.66 0.773368
Target:  5'- cAGcGCCCUgUGcaGCAgCaGCAGCGCCCUg -3'
miRNA:   3'- -UC-CGGGAgAUc-CGU-GaUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 20173 0.68 0.65147
Target:  5'- uGGCCCUCaugauggUGGcGCACaGCAucGCGUCCg -3'
miRNA:   3'- uCCGGGAG-------AUC-CGUGaUGU--UGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 20508 0.7 0.528894
Target:  5'- uGGaCCCUCUGGGagg-ACggUGCCCUu -3'
miRNA:   3'- uCC-GGGAGAUCCgugaUGuuGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.