miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27057 5' -57.7 NC_005832.1 + 36130 1.12 0.000755
Target:  5'- cAGGCCCUCUAGGCACUACAACGCCCCg -3'
miRNA:   3'- -UCCGGGAGAUCCGUGAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 72980 0.85 0.060483
Target:  5'- uGGGCCCUgaGGGCGCU-CAGgGCCCCa -3'
miRNA:   3'- -UCCGGGAgaUCCGUGAuGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 72878 0.78 0.174588
Target:  5'- aGGGCCCUCUGGGCccCUGggacccgucuugccCAACGgCCCg -3'
miRNA:   3'- -UCCGGGAGAUCCGu-GAU--------------GUUGCgGGG- -5'
27057 5' -57.7 NC_005832.1 + 52930 0.77 0.199821
Target:  5'- -aGCCC-CUGGGCA--GCAugGCCCCg -3'
miRNA:   3'- ucCGGGaGAUCCGUgaUGUugCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 876 0.75 0.282001
Target:  5'- aGGuGCCC-CUgggugugaAGGCGCUGCAGC-CCCCg -3'
miRNA:   3'- -UC-CGGGaGA--------UCCGUGAUGUUGcGGGG- -5'
27057 5' -57.7 NC_005832.1 + 96350 0.75 0.287427
Target:  5'- gAGGCCCUUUccGCACUccgaggagagcuCAGCGCCCUg -3'
miRNA:   3'- -UCCGGGAGAucCGUGAu-----------GUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 103476 0.74 0.295718
Target:  5'- gAGGUCCUCgGGGUccaggACUacGCAACuGCCCCg -3'
miRNA:   3'- -UCCGGGAGaUCCG-----UGA--UGUUG-CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1030 0.74 0.295718
Target:  5'- cGGCCCcugCUacgccGGGgGCUGCAGCGCCUUc -3'
miRNA:   3'- uCCGGGa--GA-----UCCgUGAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 47184 0.73 0.363813
Target:  5'- uGGaGCCCUCgcccGGCAuCUACGACaacgugguGCCCCu -3'
miRNA:   3'- -UC-CGGGAGau--CCGU-GAUGUUG--------CGGGG- -5'
27057 5' -57.7 NC_005832.1 + 91515 0.72 0.388802
Target:  5'- cAGGUCCguguucUUUAGGCGCUACGAcuuuacCGCCgCCa -3'
miRNA:   3'- -UCCGGG------AGAUCCGUGAUGUU------GCGG-GG- -5'
27057 5' -57.7 NC_005832.1 + 72576 0.72 0.388802
Target:  5'- gGGGCCC-CUGGGCuu--CAGgGUCCCg -3'
miRNA:   3'- -UCCGGGaGAUCCGugauGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 44536 0.72 0.388802
Target:  5'- cGGCgUgcaagCUGGGCAagacCUACGACGCCaCCg -3'
miRNA:   3'- uCCGgGa----GAUCCGU----GAUGUUGCGG-GG- -5'
27057 5' -57.7 NC_005832.1 + 81289 0.72 0.397378
Target:  5'- gGGGCCac---GGCACcGCAAgGCCCCg -3'
miRNA:   3'- -UCCGGgagauCCGUGaUGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 97404 0.71 0.457841
Target:  5'- cAGGgCCUCgAGGCcggccaggcuggcgACUACGGCGUCCa -3'
miRNA:   3'- -UCCgGGAGaUCCG--------------UGAUGUUGCGGGg -5'
27057 5' -57.7 NC_005832.1 + 71009 0.71 0.477787
Target:  5'- gGGGCUCUgCgaugucccguugGGGCuCUGCGAUGUCCCg -3'
miRNA:   3'- -UCCGGGA-Ga-----------UCCGuGAUGUUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 15799 0.71 0.483564
Target:  5'- aAGGCUCUCUugaagcugccgggagAGGCGCUccaaGAgGCCCUg -3'
miRNA:   3'- -UCCGGGAGA---------------UCCGUGAug--UUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 12949 0.7 0.499131
Target:  5'- aAGGCUggUUCagaUGGGCAUaGCgGACGCCCCa -3'
miRNA:   3'- -UCCGG--GAG---AUCCGUGaUG-UUGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 28086 0.7 0.515911
Target:  5'- gAGGCCCUUUgccguggagguugcGGGCggagACUACAA-GUCCCu -3'
miRNA:   3'- -UCCGGGAGA--------------UCCG----UGAUGUUgCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 20508 0.7 0.528894
Target:  5'- uGGaCCCUCUGGGagg-ACggUGCCCUu -3'
miRNA:   3'- uCC-GGGAGAUCCgugaUGuuGCGGGG- -5'
27057 5' -57.7 NC_005832.1 + 1344 0.7 0.528894
Target:  5'- uGGUCCUCacGGCAacccCUACAGgagUGCCCCu -3'
miRNA:   3'- uCCGGGAGauCCGU----GAUGUU---GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.