miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27058 3' -52.6 NC_005832.1 + 99570 0.66 0.955271
Target:  5'- gGCGUACUuccAGUAGG-ACcuggccccaaacggaGCCAugGCCg -3'
miRNA:   3'- -UGUAUGAc--UCGUCCaUG---------------CGGUugCGG- -5'
27058 3' -52.6 NC_005832.1 + 96872 0.66 0.953624
Target:  5'- cCAgGCUGGGCAGGUccauCGgCGAgguucucccCGCCa -3'
miRNA:   3'- uGUaUGACUCGUCCAu---GCgGUU---------GCGG- -5'
27058 3' -52.6 NC_005832.1 + 56638 0.66 0.953624
Target:  5'- gACAUugUGucccagaucaAGCAGaGgggagAUGCCAAgGCCu -3'
miRNA:   3'- -UGUAugAC----------UCGUC-Ca----UGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 55061 0.66 0.953624
Target:  5'- gGCGUGCuuUGGGgAGGUcUGCUuGCGUCg -3'
miRNA:   3'- -UGUAUG--ACUCgUCCAuGCGGuUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 98468 0.66 0.949329
Target:  5'- ---cGCUGguauAGCAGaGUgcuGCGCCAaccACGCCc -3'
miRNA:   3'- uguaUGAC----UCGUC-CA---UGCGGU---UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 68585 0.66 0.949329
Target:  5'- cCGUGCggugacgGAuGCAGuGUGCGCCGcGgGCCu -3'
miRNA:   3'- uGUAUGa------CU-CGUC-CAUGCGGU-UgCGG- -5'
27058 3' -52.6 NC_005832.1 + 97140 0.66 0.944777
Target:  5'- gGCAaagGCUGcGGCAG--ACGCCGugGCa -3'
miRNA:   3'- -UGUa--UGAC-UCGUCcaUGCGGUugCGg -5'
27058 3' -52.6 NC_005832.1 + 28355 0.66 0.944777
Target:  5'- --uUAC-GAGguGGUugGCgGuCGCCa -3'
miRNA:   3'- uguAUGaCUCguCCAugCGgUuGCGG- -5'
27058 3' -52.6 NC_005832.1 + 42371 0.66 0.943836
Target:  5'- cACGUACUGcuugauguauGGCAGGgaaaacucuaGCUuGCGCCu -3'
miRNA:   3'- -UGUAUGAC----------UCGUCCaug-------CGGuUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 35119 0.66 0.934892
Target:  5'- -gGUAgaGggaAGCAGGUACGUguACGCg -3'
miRNA:   3'- ugUAUgaC---UCGUCCAUGCGguUGCGg -5'
27058 3' -52.6 NC_005832.1 + 42791 0.66 0.934892
Target:  5'- -uGU-CUGuGCAGGUcccuauAC-CCGACGCCg -3'
miRNA:   3'- ugUAuGACuCGUCCA------UGcGGUUGCGG- -5'
27058 3' -52.6 NC_005832.1 + 54271 0.67 0.929555
Target:  5'- cACGUACagguccucGGGCAGG-GCGUCGggagggggaGCGCCg -3'
miRNA:   3'- -UGUAUGa-------CUCGUCCaUGCGGU---------UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 1042 0.67 0.929006
Target:  5'- cACAUACUcGGCcGGccccugcUACGCCGggggcugcaGCGCCu -3'
miRNA:   3'- -UGUAUGAcUCGuCC-------AUGCGGU---------UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 56692 0.67 0.923953
Target:  5'- aACAUcCUcAGUucGUGCGCCAuggACGCCa -3'
miRNA:   3'- -UGUAuGAcUCGucCAUGCGGU---UGCGG- -5'
27058 3' -52.6 NC_005832.1 + 31055 0.68 0.901605
Target:  5'- -gGUGgUGGGgugguucugccauguCAGGUGCGUCAAgGCCu -3'
miRNA:   3'- ugUAUgACUC---------------GUCCAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 8176 0.68 0.892005
Target:  5'- gGCGgaaACUGAGCAc-UGCGCCGGaGCCg -3'
miRNA:   3'- -UGUa--UGACUCGUccAUGCGGUUgCGG- -5'
27058 3' -52.6 NC_005832.1 + 1340 0.68 0.869788
Target:  5'- uGCAgACUGcaccGCggAGGU-CGCCAugGCCu -3'
miRNA:   3'- -UGUaUGACu---CG--UCCAuGCGGUugCGG- -5'
27058 3' -52.6 NC_005832.1 + 52041 0.69 0.861902
Target:  5'- gGCAUGCUuAGguGGaaagACGCCcugGACGCg -3'
miRNA:   3'- -UGUAUGAcUCguCCa---UGCGG---UUGCGg -5'
27058 3' -52.6 NC_005832.1 + 97170 0.69 0.853787
Target:  5'- uCGUACUGGGaggcCAGGUcCGCCAccACGUa -3'
miRNA:   3'- uGUAUGACUC----GUCCAuGCGGU--UGCGg -5'
27058 3' -52.6 NC_005832.1 + 15524 0.69 0.845449
Target:  5'- cCAU-CUGAGUcacaaAGGUGC-UCGACGCCa -3'
miRNA:   3'- uGUAuGACUCG-----UCCAUGcGGUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.