Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27058 | 3' | -52.6 | NC_005832.1 | + | 68585 | 0.66 | 0.949329 |
Target: 5'- cCGUGCggugacgGAuGCAGuGUGCGCCGcGgGCCu -3' miRNA: 3'- uGUAUGa------CU-CGUC-CAUGCGGU-UgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 96872 | 0.66 | 0.953624 |
Target: 5'- cCAgGCUGGGCAGGUccauCGgCGAgguucucccCGCCa -3' miRNA: 3'- uGUaUGACUCGUCCAu---GCgGUU---------GCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 98468 | 0.66 | 0.949329 |
Target: 5'- ---cGCUGguauAGCAGaGUgcuGCGCCAaccACGCCc -3' miRNA: 3'- uguaUGAC----UCGUC-CA---UGCGGU---UGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 97140 | 0.66 | 0.944777 |
Target: 5'- gGCAaagGCUGcGGCAG--ACGCCGugGCa -3' miRNA: 3'- -UGUa--UGAC-UCGUCcaUGCGGUugCGg -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 42791 | 0.66 | 0.934892 |
Target: 5'- -uGU-CUGuGCAGGUcccuauAC-CCGACGCCg -3' miRNA: 3'- ugUAuGACuCGUCCA------UGcGGUUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 42371 | 0.66 | 0.943836 |
Target: 5'- cACGUACUGcuugauguauGGCAGGgaaaacucuaGCUuGCGCCu -3' miRNA: 3'- -UGUAUGAC----------UCGUCCaug-------CGGuUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 55061 | 0.66 | 0.953624 |
Target: 5'- gGCGUGCuuUGGGgAGGUcUGCUuGCGUCg -3' miRNA: 3'- -UGUAUG--ACUCgUCCAuGCGGuUGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 28355 | 0.66 | 0.944777 |
Target: 5'- --uUAC-GAGguGGUugGCgGuCGCCa -3' miRNA: 3'- uguAUGaCUCguCCAugCGgUuGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 56638 | 0.66 | 0.953624 |
Target: 5'- gACAUugUGucccagaucaAGCAGaGgggagAUGCCAAgGCCu -3' miRNA: 3'- -UGUAugAC----------UCGUC-Ca----UGCGGUUgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 35119 | 0.66 | 0.934892 |
Target: 5'- -gGUAgaGggaAGCAGGUACGUguACGCg -3' miRNA: 3'- ugUAUgaC---UCGUCCAUGCGguUGCGg -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 99570 | 0.66 | 0.955271 |
Target: 5'- gGCGUACUuccAGUAGG-ACcuggccccaaacggaGCCAugGCCg -3' miRNA: 3'- -UGUAUGAc--UCGUCCaUG---------------CGGUugCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 54271 | 0.67 | 0.929555 |
Target: 5'- cACGUACagguccucGGGCAGG-GCGUCGggagggggaGCGCCg -3' miRNA: 3'- -UGUAUGa-------CUCGUCCaUGCGGU---------UGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 1042 | 0.67 | 0.929006 |
Target: 5'- cACAUACUcGGCcGGccccugcUACGCCGggggcugcaGCGCCu -3' miRNA: 3'- -UGUAUGAcUCGuCC-------AUGCGGU---------UGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 56692 | 0.67 | 0.923953 |
Target: 5'- aACAUcCUcAGUucGUGCGCCAuggACGCCa -3' miRNA: 3'- -UGUAuGAcUCGucCAUGCGGU---UGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 1340 | 0.68 | 0.869788 |
Target: 5'- uGCAgACUGcaccGCggAGGU-CGCCAugGCCu -3' miRNA: 3'- -UGUaUGACu---CG--UCCAuGCGGUugCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 31055 | 0.68 | 0.901605 |
Target: 5'- -gGUGgUGGGgugguucugccauguCAGGUGCGUCAAgGCCu -3' miRNA: 3'- ugUAUgACUC---------------GUCCAUGCGGUUgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 8176 | 0.68 | 0.892005 |
Target: 5'- gGCGgaaACUGAGCAc-UGCGCCGGaGCCg -3' miRNA: 3'- -UGUa--UGACUCGUccAUGCGGUUgCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 52041 | 0.69 | 0.861902 |
Target: 5'- gGCAUGCUuAGguGGaaagACGCCcugGACGCg -3' miRNA: 3'- -UGUAUGAcUCguCCa---UGCGG---UUGCGg -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 47488 | 0.69 | 0.82814 |
Target: 5'- -gAUAggGAGCAGGUccACuGCCAcgACGCCc -3' miRNA: 3'- ugUAUgaCUCGUCCA--UG-CGGU--UGCGG- -5' |
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27058 | 3' | -52.6 | NC_005832.1 | + | 15524 | 0.69 | 0.845449 |
Target: 5'- cCAU-CUGAGUcacaaAGGUGC-UCGACGCCa -3' miRNA: 3'- uGUAuGACUCG-----UCCAUGcGGUUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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