miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27058 5' -63.9 NC_005832.1 + 23753 0.66 0.510506
Target:  5'- gCCGGCCU--GCcuUACGCCGCCcugcCCGa -3'
miRNA:   3'- -GGCCGGGacCGc-AUGCGGCGGa---GGCa -5'
27058 5' -63.9 NC_005832.1 + 12898 0.66 0.501168
Target:  5'- --cGCCCUGGCGUGCGggGCC-CUGc -3'
miRNA:   3'- ggcCGGGACCGCAUGCggCGGaGGCa -5'
27058 5' -63.9 NC_005832.1 + 49355 0.66 0.501168
Target:  5'- cCCGuacauCUCUucGGCGUGCGCCGCCaugUCCc- -3'
miRNA:   3'- -GGCc----GGGA--CCGCAUGCGGCGG---AGGca -5'
27058 5' -63.9 NC_005832.1 + 2034 0.66 0.501168
Target:  5'- aCGGUCCUGGgGUcUGCCcuCCUcaCCGUg -3'
miRNA:   3'- gGCCGGGACCgCAuGCGGc-GGA--GGCA- -5'
27058 5' -63.9 NC_005832.1 + 52862 0.66 0.500239
Target:  5'- uCUGGCCuCUaucagaccuuugcGGCGgcCGCCGCCgcucacUCUGUg -3'
miRNA:   3'- -GGCCGG-GA-------------CCGCauGCGGCGG------AGGCA- -5'
27058 5' -63.9 NC_005832.1 + 622 0.66 0.491907
Target:  5'- cUCGGCCCacaggGGCcccgaccaggACGCCGCC-CUGg -3'
miRNA:   3'- -GGCCGGGa----CCGca--------UGCGGCGGaGGCa -5'
27058 5' -63.9 NC_005832.1 + 20670 0.66 0.482725
Target:  5'- aCC-GCCCUGGUGaGgGCCcuGCCUuCCGg -3'
miRNA:   3'- -GGcCGGGACCGCaUgCGG--CGGA-GGCa -5'
27058 5' -63.9 NC_005832.1 + 36511 0.66 0.482725
Target:  5'- gCGGCCaCggaggcGGCGUACGCCaggGCCgggggCCa- -3'
miRNA:   3'- gGCCGG-Ga-----CCGCAUGCGG---CGGa----GGca -5'
27058 5' -63.9 NC_005832.1 + 27993 0.66 0.464616
Target:  5'- -aGGUCCagGGCcUGCccgGCCGCCUCCu- -3'
miRNA:   3'- ggCCGGGa-CCGcAUG---CGGCGGAGGca -5'
27058 5' -63.9 NC_005832.1 + 81002 0.66 0.455695
Target:  5'- cCCGGUCCaaGaGUACGCCucgGCCUCCc- -3'
miRNA:   3'- -GGCCGGGacCgCAUGCGG---CGGAGGca -5'
27058 5' -63.9 NC_005832.1 + 56881 0.67 0.446867
Target:  5'- uCUGGCcuaaaCCUGGCGcagUACGCCuacGUCUCCa- -3'
miRNA:   3'- -GGCCG-----GGACCGC---AUGCGG---CGGAGGca -5'
27058 5' -63.9 NC_005832.1 + 13172 0.67 0.446867
Target:  5'- -aGGCCCccgagcUGGCa---GCCGUCUCCGa -3'
miRNA:   3'- ggCCGGG------ACCGcaugCGGCGGAGGCa -5'
27058 5' -63.9 NC_005832.1 + 39471 0.67 0.42097
Target:  5'- -gGGCCCUGGU---CGCCGUCguccCCGg -3'
miRNA:   3'- ggCCGGGACCGcauGCGGCGGa---GGCa -5'
27058 5' -63.9 NC_005832.1 + 48308 0.67 0.405044
Target:  5'- -gGGCCCUGGUcacggccugacaugACGCCGUCUCgaCGUa -3'
miRNA:   3'- ggCCGGGACCGca------------UGCGGCGGAG--GCA- -5'
27058 5' -63.9 NC_005832.1 + 7787 0.67 0.404216
Target:  5'- uUCGGCCaccGCGUACGCCaCgUCCGc -3'
miRNA:   3'- -GGCCGGgacCGCAUGCGGcGgAGGCa -5'
27058 5' -63.9 NC_005832.1 + 36792 0.68 0.38789
Target:  5'- aCgGGCCCUacucguucgcGGCuccuacCGCCGCCUCCu- -3'
miRNA:   3'- -GgCCGGGA----------CCGcau---GCGGCGGAGGca -5'
27058 5' -63.9 NC_005832.1 + 20718 0.68 0.364228
Target:  5'- gCC-GCCCUGGCGUACacgguggcuagaGCCGUC-CCa- -3'
miRNA:   3'- -GGcCGGGACCGCAUG------------CGGCGGaGGca -5'
27058 5' -63.9 NC_005832.1 + 76415 0.69 0.349018
Target:  5'- uUGGCCCUGGCacagGUGCcucuccucucuGCCGCCUgCu- -3'
miRNA:   3'- gGCCGGGACCG----CAUG-----------CGGCGGAgGca -5'
27058 5' -63.9 NC_005832.1 + 102498 0.7 0.292781
Target:  5'- gCGGCCUccaUGGC-UACGaCCGCCUCgGc -3'
miRNA:   3'- gGCCGGG---ACCGcAUGC-GGCGGAGgCa -5'
27058 5' -63.9 NC_005832.1 + 75869 0.7 0.273595
Target:  5'- aCGGCCCUGGCGgugugagGCGUCuuaaggggaGCCUCg-- -3'
miRNA:   3'- gGCCGGGACCGCa------UGCGG---------CGGAGgca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.