Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27066 | 3' | -49.7 | NC_005832.1 | + | 41000 | 1.12 | 0.005657 |
Target: 5'- uGGUAAAGACGGACCUGGCCGUAAAGAu -3' miRNA: 3'- -CCAUUUCUGCCUGGACCGGCAUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 66883 | 0.77 | 0.59903 |
Target: 5'- --gGGAGACGGgaggaaggggcACCUGGCCGUAGugGGAc -3' miRNA: 3'- ccaUUUCUGCC-----------UGGACCGGCAUU--UCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 56534 | 0.77 | 0.620727 |
Target: 5'- --gGGAGugGGGuuCCUGGCCGgcAGGAg -3' miRNA: 3'- ccaUUUCugCCU--GGACCGGCauUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 47914 | 0.76 | 0.696466 |
Target: 5'- ---cGAGGCGGAgguCCUGGCCGaGAGGGg -3' miRNA: 3'- ccauUUCUGCCU---GGACCGGCaUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 41065 | 0.75 | 0.707126 |
Target: 5'- gGGUAcGGGACGGcAUCaaaguaaaacgaUGGCCGUAAAGAc -3' miRNA: 3'- -CCAU-UUCUGCC-UGG------------ACCGGCAUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 97035 | 0.74 | 0.779128 |
Target: 5'- cGUGGuGGCGGACCUGGCCu------ -3' miRNA: 3'- cCAUUuCUGCCUGGACCGGcauuucu -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 36233 | 0.74 | 0.788907 |
Target: 5'- cGGgaGGGucGCGGACCUugaGGCCGUAcuugGAGAg -3' miRNA: 3'- -CCauUUC--UGCCUGGA---CCGGCAU----UUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 6093 | 0.74 | 0.798528 |
Target: 5'- gGGUucauGAGAagcaucgucuCGGACCUGGCC-UGGGGAc -3' miRNA: 3'- -CCAu---UUCU----------GCCUGGACCGGcAUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 74451 | 0.73 | 0.817249 |
Target: 5'- aGUAccuGACGGGCCUGgacGCCGUcAAGAu -3' miRNA: 3'- cCAUuu-CUGCCUGGAC---CGGCAuUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 40820 | 0.72 | 0.876332 |
Target: 5'- aGGgccAGGcCGGACCUGggagccacccuGCCGUAGAGGc -3' miRNA: 3'- -CCau-UUCuGCCUGGAC-----------CGGCAUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 38589 | 0.71 | 0.898112 |
Target: 5'- -cUAAGGAgGGACCUGGCUagcccgggcaggGUGGAGc -3' miRNA: 3'- ccAUUUCUgCCUGGACCGG------------CAUUUCu -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 2023 | 0.71 | 0.900841 |
Target: 5'- cGGacuuuAAGACGGuCCUGGggucugcccuccucaCCGUGGAGAg -3' miRNA: 3'- -CCau---UUCUGCCuGGACC---------------GGCAUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 54226 | 0.7 | 0.927496 |
Target: 5'- uGUAAAGACccuagaguccggaaGGaACCUGGCCGcAGAGu -3' miRNA: 3'- cCAUUUCUG--------------CC-UGGACCGGCaUUUCu -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 19843 | 0.7 | 0.934576 |
Target: 5'- cGGUcccccuGACGGuCUUGGCCGguuucgGAGGAc -3' miRNA: 3'- -CCAuuu---CUGCCuGGACCGGCa-----UUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 65644 | 0.7 | 0.934576 |
Target: 5'- uGG-AAGGACaGGAaggcCCUGGCCGUcuucaGGGGAu -3' miRNA: 3'- -CCaUUUCUG-CCU----GGACCGGCA-----UUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 61911 | 0.69 | 0.949188 |
Target: 5'- -cUAGAGAUGGACUcgaggaGGCCGUuuGGGu -3' miRNA: 3'- ccAUUUCUGCCUGGa-----CCGGCAuuUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 27951 | 0.69 | 0.953531 |
Target: 5'- gGGUcccgccGGAGACGG-CCUGGUCGUc---- -3' miRNA: 3'- -CCA------UUUCUGCCuGGACCGGCAuuucu -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 54005 | 0.69 | 0.96145 |
Target: 5'- uGGgaGAGACGGAgccccucucCCUGGCgGUGccgugagcGGGAg -3' miRNA: 3'- -CCauUUCUGCCU---------GGACCGgCAU--------UUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 43389 | 0.69 | 0.96145 |
Target: 5'- cGUGAGGAgGGugCUGGaCCcaGAGGGg -3' miRNA: 3'- cCAUUUCUgCCugGACC-GGcaUUUCU- -5' |
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27066 | 3' | -49.7 | NC_005832.1 | + | 52362 | 0.69 | 0.965036 |
Target: 5'- aGGgGAGGAgGGucguggcuCCUGGCCGUGGc-- -3' miRNA: 3'- -CCaUUUCUgCCu-------GGACCGGCAUUucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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