miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27066 3' -49.7 NC_005832.1 + 1460 0.68 0.971492
Target:  5'- cGUGAGGACcaagagggGGGCCugUGGCUGggGAGGg -3'
miRNA:   3'- cCAUUUCUG--------CCUGG--ACCGGCauUUCU- -5'
27066 3' -49.7 NC_005832.1 + 1909 0.68 0.974376
Target:  5'- ---cAAGAgGGGCCUGGCCau--GGAc -3'
miRNA:   3'- ccauUUCUgCCUGGACCGGcauuUCU- -5'
27066 3' -49.7 NC_005832.1 + 2023 0.71 0.900841
Target:  5'- cGGacuuuAAGACGGuCCUGGggucugcccuccucaCCGUGGAGAg -3'
miRNA:   3'- -CCau---UUCUGCCuGGACC---------------GGCAUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 5700 0.66 0.992729
Target:  5'- cGGggGAGACGGugACCaGGCCGc----- -3'
miRNA:   3'- -CCauUUCUGCC--UGGaCCGGCauuucu -5'
27066 3' -49.7 NC_005832.1 + 6093 0.74 0.798528
Target:  5'- gGGUucauGAGAagcaucgucuCGGACCUGGCC-UGGGGAc -3'
miRNA:   3'- -CCAu---UUCU----------GCCUGGACCGGcAUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 10751 0.68 0.977043
Target:  5'- aGGUuagGAGGAUGGccgggcagaACCUGGCCGa----- -3'
miRNA:   3'- -CCA---UUUCUGCC---------UGGACCGGCauuucu -5'
27066 3' -49.7 NC_005832.1 + 19843 0.7 0.934576
Target:  5'- cGGUcccccuGACGGuCUUGGCCGguuucgGAGGAc -3'
miRNA:   3'- -CCAuuu---CUGCCuGGACCGGCa-----UUUCU- -5'
27066 3' -49.7 NC_005832.1 + 24466 0.66 0.991608
Target:  5'- cGGUGGAGGCacGugCUGGCCa------ -3'
miRNA:   3'- -CCAUUUCUGc-CugGACCGGcauuucu -5'
27066 3' -49.7 NC_005832.1 + 27951 0.69 0.953531
Target:  5'- gGGUcccgccGGAGACGG-CCUGGUCGUc---- -3'
miRNA:   3'- -CCA------UUUCUGCCuGGACCGGCAuuucu -5'
27066 3' -49.7 NC_005832.1 + 28073 0.68 0.968381
Target:  5'- uGGUGGGGACcaagaGGcCCUuuGCCGUGGAGGu -3'
miRNA:   3'- -CCAUUUCUG-----CCuGGAc-CGGCAUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 32249 0.67 0.987248
Target:  5'- uGGUGAGGG-GGGCgaGGCUGaccgcccUAGAGAa -3'
miRNA:   3'- -CCAUUUCUgCCUGgaCCGGC-------AUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 32452 0.67 0.985702
Target:  5'- --aGGAGGCaGuACCUGGCCGcAAAGu -3'
miRNA:   3'- ccaUUUCUGcC-UGGACCGGCaUUUCu -5'
27066 3' -49.7 NC_005832.1 + 35345 0.66 0.993727
Target:  5'- gGGUAGAGGCuucGGAUccuuccgaCUGGCaCGcgGAAGAg -3'
miRNA:   3'- -CCAUUUCUG---CCUG--------GACCG-GCa-UUUCU- -5'
27066 3' -49.7 NC_005832.1 + 36233 0.74 0.788907
Target:  5'- cGGgaGGGucGCGGACCUugaGGCCGUAcuugGAGAg -3'
miRNA:   3'- -CCauUUC--UGCCUGGA---CCGGCAU----UUCU- -5'
27066 3' -49.7 NC_005832.1 + 37549 0.68 0.968381
Target:  5'- --cGGGGugGG-CgaGGCCGUAGAGu -3'
miRNA:   3'- ccaUUUCugCCuGgaCCGGCAUUUCu -5'
27066 3' -49.7 NC_005832.1 + 38589 0.71 0.898112
Target:  5'- -cUAAGGAgGGACCUGGCUagcccgggcaggGUGGAGc -3'
miRNA:   3'- ccAUUUCUgCCUGGACCGG------------CAUUUCu -5'
27066 3' -49.7 NC_005832.1 + 40820 0.72 0.876332
Target:  5'- aGGgccAGGcCGGACCUGggagccacccuGCCGUAGAGGc -3'
miRNA:   3'- -CCau-UUCuGCCUGGAC-----------CGGCAUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 41000 1.12 0.005657
Target:  5'- uGGUAAAGACGGACCUGGCCGUAAAGAu -3'
miRNA:   3'- -CCAUUUCUGCCUGGACCGGCAUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 41065 0.75 0.707126
Target:  5'- gGGUAcGGGACGGcAUCaaaguaaaacgaUGGCCGUAAAGAc -3'
miRNA:   3'- -CCAU-UUCUGCC-UGG------------ACCGGCAUUUCU- -5'
27066 3' -49.7 NC_005832.1 + 43389 0.69 0.96145
Target:  5'- cGUGAGGAgGGugCUGGaCCcaGAGGGg -3'
miRNA:   3'- cCAUUUCUgCCugGACC-GGcaUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.