Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2707 | 3' | -59.6 | NC_001491.2 | + | 119375 | 1.07 | 0.001713 |
Target: 5'- aGCCGCUACACGCCCACCGCCCAUCAUc -3' miRNA: 3'- -CGGCGAUGUGCGGGUGGCGGGUAGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 141598 | 0.76 | 0.227636 |
Target: 5'- uGCCGCUauccccGCGgGCCCugCGCCCGUa-- -3' miRNA: 3'- -CGGCGA------UGUgCGGGugGCGGGUAgua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 125477 | 0.76 | 0.238793 |
Target: 5'- cCCGCgg-GCGCCCGCCGCCCGcCGg -3' miRNA: 3'- cGGCGaugUGCGGGUGGCGGGUaGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 125173 | 0.75 | 0.250404 |
Target: 5'- uCCGCUGCGCGCUCGCuCGCCgCcgCAa -3' miRNA: 3'- cGGCGAUGUGCGGGUG-GCGG-GuaGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 123108 | 0.72 | 0.368238 |
Target: 5'- cGCCGCUccggaGCGCGUCCGCUGCCUc---- -3' miRNA: 3'- -CGGCGA-----UGUGCGGGUGGCGGGuagua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 140032 | 0.72 | 0.384373 |
Target: 5'- gGUCGCUACGCGgCCAgCCccauGCCCGUCu- -3' miRNA: 3'- -CGGCGAUGUGCgGGU-GG----CGGGUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 139706 | 0.71 | 0.418016 |
Target: 5'- cGCCGCggcguaccUGCGCGCCCGCgGCCgCAa--- -3' miRNA: 3'- -CGGCG--------AUGUGCGGGUGgCGG-GUagua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 49468 | 0.71 | 0.45068 |
Target: 5'- gGCCGUcccggACGCGgcgcagcggggaacCCCGCCGUCCGUCGa -3' miRNA: 3'- -CGGCGa----UGUGC--------------GGGUGGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149406 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149802 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149766 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149622 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149586 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149550 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149730 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149694 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149658 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149514 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149442 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 149478 | 0.7 | 0.48096 |
Target: 5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3' miRNA: 3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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