Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2707 | 3' | -59.6 | NC_001491.2 | + | 1790 | 0.68 | 0.638193 |
Target: 5'- cGCCGUc-CACGCCCGCggccgcucUGCCCcgCGUu -3' miRNA: 3'- -CGGCGauGUGCGGGUG--------GCGGGuaGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 4158 | 0.67 | 0.658333 |
Target: 5'- uGCUGCgaucugcaaACGCGCCUACaCGCCUuuuUCAUc -3' miRNA: 3'- -CGGCGa--------UGUGCGGGUG-GCGGGu--AGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 7129 | 0.67 | 0.677391 |
Target: 5'- uGCCGCguuuaccaucuggUAUACcCUCACCGCCCAgcugCAc -3' miRNA: 3'- -CGGCG-------------AUGUGcGGGUGGCGGGUa---GUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 26667 | 0.69 | 0.577898 |
Target: 5'- cCUGCUuuACGCGCCCAUCGCCg----- -3' miRNA: 3'- cGGCGA--UGUGCGGGUGGCGGguagua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 28600 | 0.68 | 0.637185 |
Target: 5'- aGCCGC-GCGCGCUagguaugUAgCGUCCAUCAUc -3' miRNA: 3'- -CGGCGaUGUGCGG-------GUgGCGGGUAGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 29549 | 0.67 | 0.648269 |
Target: 5'- uGUgGCgUACAUGCCUACCGUgUCAUCGUc -3' miRNA: 3'- -CGgCG-AUGUGCGGGUGGCG-GGUAGUA- -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 40100 | 0.66 | 0.75646 |
Target: 5'- -aCGCUGCGacUGCCCGCUGCgCAgUCGc -3' miRNA: 3'- cgGCGAUGU--GCGGGUGGCGgGU-AGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 43051 | 0.7 | 0.51893 |
Target: 5'- --gGCUAUcuuuGCGgCCGCCGCCCGUCc- -3' miRNA: 3'- cggCGAUG----UGCgGGUGGCGGGUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 49468 | 0.71 | 0.45068 |
Target: 5'- gGCCGUcccggACGCGgcgcagcggggaacCCCGCCGUCCGUCGa -3' miRNA: 3'- -CGGCGa----UGUGC--------------GGGUGGCGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 67984 | 0.66 | 0.717017 |
Target: 5'- aGCCGCUGCG-GCCUuuuugguGCgCGCCCAa--- -3' miRNA: 3'- -CGGCGAUGUgCGGG-------UG-GCGGGUagua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 74033 | 0.67 | 0.658333 |
Target: 5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3' miRNA: 3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 74097 | 0.67 | 0.658333 |
Target: 5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3' miRNA: 3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 74161 | 0.67 | 0.658333 |
Target: 5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3' miRNA: 3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 74225 | 0.67 | 0.658333 |
Target: 5'- cGCCGCaGCAgcccucgcuccCGCCgCGCCGCCgCcgCAg -3' miRNA: 3'- -CGGCGaUGU-----------GCGG-GUGGCGG-GuaGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 75088 | 0.69 | 0.558029 |
Target: 5'- -gCGCUAUACccaaCCCACCGauCCCGUCAa -3' miRNA: 3'- cgGCGAUGUGc---GGGUGGC--GGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 81312 | 0.68 | 0.638193 |
Target: 5'- gGCCGUggGCaACGCCCGCCggcgugGCCggCAUCAg -3' miRNA: 3'- -CGGCGa-UG-UGCGGGUGG------CGG--GUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 95450 | 0.66 | 0.75646 |
Target: 5'- -aCGUUGCGC-CCCGCCacgagucuGUCCAUCAg -3' miRNA: 3'- cgGCGAUGUGcGGGUGG--------CGGGUAGUa -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 96341 | 0.68 | 0.587892 |
Target: 5'- gGCCGCUggaggcgcaggcAgGCGCCCaggACCGCCaCAUUg- -3' miRNA: 3'- -CGGCGA------------UgUGCGGG---UGGCGG-GUAGua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 101844 | 0.66 | 0.717996 |
Target: 5'- aGCgGCUcaaGCGCGCCCccggcgcgACCGUCCAc--- -3' miRNA: 3'- -CGgCGA---UGUGCGGG--------UGGCGGGUagua -5' |
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2707 | 3' | -59.6 | NC_001491.2 | + | 110577 | 0.68 | 0.618035 |
Target: 5'- uGCC-CUACccagacauaGCGUCCACCaGCCCAUUg- -3' miRNA: 3'- -CGGcGAUG---------UGCGGGUGG-CGGGUAGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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