miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27079 3' -52.7 NC_005832.1 + 50546 1.13 0.002079
Target:  5'- gCUCAGACCAUAAGGACUUGGGCCACCa -3'
miRNA:   3'- -GAGUCUGGUAUUCCUGAACCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 103339 0.77 0.41163
Target:  5'- -aCAGACCGUGGGGACagGGcaGCUACCc -3'
miRNA:   3'- gaGUCUGGUAUUCCUGaaCC--CGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 51068 0.76 0.488167
Target:  5'- -aCGGGCCAUAGGGAgUcaUGGGUC-CCg -3'
miRNA:   3'- gaGUCUGGUAUUCCUgA--ACCCGGuGG- -5'
27079 3' -52.7 NC_005832.1 + 52697 0.75 0.528868
Target:  5'- --aGGGCCGUGGugguGGACUUGGGCaugGCCa -3'
miRNA:   3'- gagUCUGGUAUU----CCUGAACCCGg--UGG- -5'
27079 3' -52.7 NC_005832.1 + 82797 0.75 0.528868
Target:  5'- uUguGACUAUcaAGGGACUgucgGGGUCACCc -3'
miRNA:   3'- gAguCUGGUA--UUCCUGAa---CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 56325 0.74 0.560195
Target:  5'- -aCGGGCC-UGGGGACguagcccaGGGCCACUg -3'
miRNA:   3'- gaGUCUGGuAUUCCUGaa------CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 72800 0.74 0.570756
Target:  5'- cCUgGGACCAacGGGACccuUUGGGCCGUCg -3'
miRNA:   3'- -GAgUCUGGUauUCCUG---AACCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 16783 0.74 0.592013
Target:  5'- ---uGACCAUGuGGACUgGGGCgGCCu -3'
miRNA:   3'- gaguCUGGUAUuCCUGAaCCCGgUGG- -5'
27079 3' -52.7 NC_005832.1 + 32713 0.74 0.602694
Target:  5'- uCUCGGGCCugaagggAAGGACgUUGGGaCgGCCu -3'
miRNA:   3'- -GAGUCUGGua-----UUCCUG-AACCC-GgUGG- -5'
27079 3' -52.7 NC_005832.1 + 32806 0.74 0.602694
Target:  5'- uCUCGGGCCugaagggAAGGACgUUGGGaCgGCCu -3'
miRNA:   3'- -GAGUCUGGua-----UUCCUG-AACCC-GgUGG- -5'
27079 3' -52.7 NC_005832.1 + 101878 0.73 0.613398
Target:  5'- --aGGGCCGggAAGGGCUUGGaccCCACCa -3'
miRNA:   3'- gagUCUGGUa-UUCCUGAACCc--GGUGG- -5'
27079 3' -52.7 NC_005832.1 + 67234 0.73 0.634846
Target:  5'- cCUCAGGCCcu-GGGAgaggGGGCUGCCu -3'
miRNA:   3'- -GAGUCUGGuauUCCUgaa-CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 47969 0.73 0.64557
Target:  5'- cCUCGGGCUG-AGGGACgucGGGCCcCCu -3'
miRNA:   3'- -GAGUCUGGUaUUCCUGaa-CCCGGuGG- -5'
27079 3' -52.7 NC_005832.1 + 72557 0.73 0.656283
Target:  5'- -aCGGuccCCGUGGGGACgugGGGCC-CCu -3'
miRNA:   3'- gaGUCu--GGUAUUCCUGaa-CCCGGuGG- -5'
27079 3' -52.7 NC_005832.1 + 53410 0.72 0.677635
Target:  5'- gUCAGGCUAaagAAGGACgacgcugUcgucaagaGGGCCACCg -3'
miRNA:   3'- gAGUCUGGUa--UUCCUGa------A--------CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 79904 0.71 0.719766
Target:  5'- cCUCGGACCcuucGGcGAUggGGGCCugCg -3'
miRNA:   3'- -GAGUCUGGuau-UC-CUGaaCCCGGugG- -5'
27079 3' -52.7 NC_005832.1 + 42522 0.71 0.730119
Target:  5'- -gCGGAcgcgugcugcuCCAUGAGGA---GGGCCGCCa -3'
miRNA:   3'- gaGUCU-----------GGUAUUCCUgaaCCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 79106 0.71 0.750534
Target:  5'- --gAGGuCCGUGAGGACguaGGGCCugaACCu -3'
miRNA:   3'- gagUCU-GGUAUUCCUGaa-CCCGG---UGG- -5'
27079 3' -52.7 NC_005832.1 + 50246 0.71 0.760575
Target:  5'- aCUCuGACCAagcagagucGGGCgucgaGGGCCACCu -3'
miRNA:   3'- -GAGuCUGGUauu------CCUGaa---CCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 74867 0.7 0.780272
Target:  5'- gCUCGGACC-UGGGGucccuCUacgGGGCCcugGCCg -3'
miRNA:   3'- -GAGUCUGGuAUUCCu----GAa--CCCGG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.