miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27079 3' -52.7 NC_005832.1 + 1256 0.68 0.868458
Target:  5'- ---cGACCuguccucgcGGGACgccggcUGGGCCACCa -3'
miRNA:   3'- gaguCUGGuau------UCCUGa-----ACCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 1467 0.67 0.916905
Target:  5'- --gGGuuGCCGUGAGGACcaagagggGGGCCugUg -3'
miRNA:   3'- gagUC--UGGUAUUCCUGaa------CCCGGugG- -5'
27079 3' -52.7 NC_005832.1 + 1592 0.68 0.876121
Target:  5'- gCUguGGCCAUGAGGGCcugcUGGaggcaguuGuCCACCg -3'
miRNA:   3'- -GAguCUGGUAUUCCUGa---ACC--------C-GGUGG- -5'
27079 3' -52.7 NC_005832.1 + 2147 0.68 0.882814
Target:  5'- --aGGACCGUcuuaaaguccgagGGGGACa-GGGCCACg -3'
miRNA:   3'- gagUCUGGUA-------------UUCCUGaaCCCGGUGg -5'
27079 3' -52.7 NC_005832.1 + 6639 0.67 0.928437
Target:  5'- -gCAGAUagc-GGGGCUccUGGGCCAgCa -3'
miRNA:   3'- gaGUCUGguauUCCUGA--ACCCGGUgG- -5'
27079 3' -52.7 NC_005832.1 + 7447 0.69 0.835543
Target:  5'- gUCAGAaacCCAUGAGGAggcagugcgUGGuGCCGCUg -3'
miRNA:   3'- gAGUCU---GGUAUUCCUga-------ACC-CGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 10507 0.67 0.916905
Target:  5'- gUCAGACagcAGGGACa--GGCCGCUg -3'
miRNA:   3'- gAGUCUGguaUUCCUGaacCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 11703 0.7 0.789907
Target:  5'- gUCGGacgucGCCAUGAGGA---GGGCCGuCCa -3'
miRNA:   3'- gAGUC-----UGGUAUUCCUgaaCCCGGU-GG- -5'
27079 3' -52.7 NC_005832.1 + 11884 0.69 0.84746
Target:  5'- aCUCGG-CgGUGAGGGCUccgucucccauagcGGGCCGCa -3'
miRNA:   3'- -GAGUCuGgUAUUCCUGAa-------------CCCGGUGg -5'
27079 3' -52.7 NC_005832.1 + 11998 0.68 0.890724
Target:  5'- gUCGGACCGUuucgAAGG-C-UGGGCCGg- -3'
miRNA:   3'- gAGUCUGGUA----UUCCuGaACCCGGUgg -5'
27079 3' -52.7 NC_005832.1 + 16783 0.74 0.592013
Target:  5'- ---uGACCAUGuGGACUgGGGCgGCCu -3'
miRNA:   3'- gaguCUGGUAUuCCUGAaCCCGgUGG- -5'
27079 3' -52.7 NC_005832.1 + 20789 0.66 0.938919
Target:  5'- cCUCaccaGGGCgGUAAGGuACUcUGGGCCGgUg -3'
miRNA:   3'- -GAG----UCUGgUAUUCC-UGA-ACCCGGUgG- -5'
27079 3' -52.7 NC_005832.1 + 26609 0.69 0.852439
Target:  5'- ---cGGCCuuUAAGGugGCgaGGGCCGCCg -3'
miRNA:   3'- gaguCUGGu-AUUCC--UGaaCCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 28054 0.66 0.933809
Target:  5'- gCUCAGGCCcuguccagggugGUGGGGACcaaGaGGCCcuuuGCCg -3'
miRNA:   3'- -GAGUCUGG------------UAUUCCUGaa-C-CCGG----UGG- -5'
27079 3' -52.7 NC_005832.1 + 31454 0.68 0.890724
Target:  5'- -aCAGACagaGUcAGGGGCUUcaucuagacGGGCCACa -3'
miRNA:   3'- gaGUCUGg--UA-UUCCUGAA---------CCCGGUGg -5'
27079 3' -52.7 NC_005832.1 + 32713 0.74 0.602694
Target:  5'- uCUCGGGCCugaagggAAGGACgUUGGGaCgGCCu -3'
miRNA:   3'- -GAGUCUGGua-----UUCCUG-AACCC-GgUGG- -5'
27079 3' -52.7 NC_005832.1 + 32806 0.74 0.602694
Target:  5'- uCUCGGGCCugaagggAAGGACgUUGGGaCgGCCu -3'
miRNA:   3'- -GAGUCUGGua-----UUCCUG-AACCC-GgUGG- -5'
27079 3' -52.7 NC_005832.1 + 40820 0.66 0.938919
Target:  5'- --aGGGCCAggccGGACcugGGaGCCACCc -3'
miRNA:   3'- gagUCUGGUauu-CCUGaa-CC-CGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 41575 0.67 0.928437
Target:  5'- gCUgAGGCCGagGAGGA----GGCCGCCg -3'
miRNA:   3'- -GAgUCUGGUa-UUCCUgaacCCGGUGG- -5'
27079 3' -52.7 NC_005832.1 + 41989 0.69 0.835543
Target:  5'- uUCGG-CCGUGugcuggaccAGGACcgagGGGUCACCu -3'
miRNA:   3'- gAGUCuGGUAU---------UCCUGaa--CCCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.