Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27079 | 5' | -60 | NC_005832.1 | + | 19943 | 0.66 | 0.682962 |
Target: 5'- -uGG-GGGUggAGGUCCUCGgGGCa- -3' miRNA: 3'- cuUCaCCCAagUCCAGGGGCgCCGgg -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 104140 | 0.66 | 0.67893 |
Target: 5'- cAGGUGGGcaCAGGccauguugucuacCCCCacggcguccgcgGCGGCCCu -3' miRNA: 3'- cUUCACCCaaGUCCa------------GGGG------------CGCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 43790 | 0.66 | 0.652599 |
Target: 5'- aGAGGcUGGGUUUcgacgagauGG-CCCaCGgGGCCCu -3' miRNA: 3'- -CUUC-ACCCAAGu--------CCaGGG-GCgCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 72649 | 0.66 | 0.642434 |
Target: 5'- ---aUGGGcccgCGGGg-CCCGaCGGCCCa -3' miRNA: 3'- cuucACCCaa--GUCCagGGGC-GCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 32441 | 0.67 | 0.622089 |
Target: 5'- --cGUGGa--CAGGUCCCaCGgGGaCCCu -3' miRNA: 3'- cuuCACCcaaGUCCAGGG-GCgCC-GGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 31274 | 0.67 | 0.618022 |
Target: 5'- gGAGGUGGGguggaugcaagaCAGGgcaagggcggCCgUGUGGCCCg -3' miRNA: 3'- -CUUCACCCaa----------GUCCa---------GGgGCGCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 44676 | 0.67 | 0.605831 |
Target: 5'- -cGGUGGcGUcgUAGGUCUugcccagcuugcacgCCGCGGUCCc -3' miRNA: 3'- cuUCACC-CAa-GUCCAGG---------------GGCGCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 7097 | 0.67 | 0.601774 |
Target: 5'- -----aGGUcUCAGGUCCCCGgCGGUgaCCa -3' miRNA: 3'- cuucacCCA-AGUCCAGGGGC-GCCG--GG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 65476 | 0.67 | 0.581547 |
Target: 5'- aGAGG-GGGcccUCAcGUCCCCGUGGUguCCa -3' miRNA: 3'- -CUUCaCCCa--AGUcCAGGGGCGCCG--GG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 70989 | 0.67 | 0.571485 |
Target: 5'- aGAGUacGGca-GGGUCCCCGUuaGGCCCc -3' miRNA: 3'- cUUCAc-CCaagUCCAGGGGCG--CCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 79689 | 0.67 | 0.571485 |
Target: 5'- ---uUGGGgagCAGGUuggCCCUGaGGCCCg -3' miRNA: 3'- cuucACCCaa-GUCCA---GGGGCgCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 104857 | 0.68 | 0.565467 |
Target: 5'- ----aGGGUUCAGGUagagugucccaaaacCCCCGUGGaguggaacacCCCu -3' miRNA: 3'- cuucaCCCAAGUCCA---------------GGGGCGCC----------GGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 7267 | 0.68 | 0.561464 |
Target: 5'- gGGAGaGGGUggcaAGGUCCUaCGCGGCg- -3' miRNA: 3'- -CUUCaCCCAag--UCCAGGG-GCGCCGgg -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 72738 | 0.68 | 0.541575 |
Target: 5'- ---uUGGGcaagaCGGGUCCCaGgGGCCCa -3' miRNA: 3'- cuucACCCaa---GUCCAGGGgCgCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 56075 | 0.68 | 0.512205 |
Target: 5'- aAAGgGaGGUgCAGaGUCCCCGgcacCGGCCCa -3' miRNA: 3'- cUUCaC-CCAaGUC-CAGGGGC----GCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 54942 | 0.69 | 0.483513 |
Target: 5'- ----gGGGUcCAGGacgguccCCCCGuCGGCCCu -3' miRNA: 3'- cuucaCCCAaGUCCa------GGGGC-GCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 26455 | 0.69 | 0.474121 |
Target: 5'- ---cUGGGgagugUCGGGcagccaCCCgGCGGCCCu -3' miRNA: 3'- cuucACCCa----AGUCCa-----GGGgCGCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 48094 | 0.7 | 0.446512 |
Target: 5'- cAAGUGGGa--AGGUCCCUGaGGCUg -3' miRNA: 3'- cUUCACCCaagUCCAGGGGCgCCGGg -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 67211 | 0.7 | 0.43127 |
Target: 5'- cGGAGUggccuccagggccucGGcGUcCAGGUCaggccucuuuacgCCCGCGGCCCu -3' miRNA: 3'- -CUUCA---------------CC-CAaGUCCAG-------------GGGCGCCGGG- -5' |
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27079 | 5' | -60 | NC_005832.1 | + | 32505 | 0.7 | 0.411142 |
Target: 5'- --cGUGGGUcUUAGGUgCUUgGCGGCCUg -3' miRNA: 3'- cuuCACCCA-AGUCCA-GGGgCGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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