Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27079 | 5' | -60 | NC_005832.1 | + | 67211 | 0.7 | 0.43127 |
Target: 5'- cGGAGUggccuccagggccucGGcGUcCAGGUCaggccucuuuacgCCCGCGGCCCu -3' miRNA: 3'- -CUUCA---------------CC-CAaGUCCAG-------------GGGCGCCGGG- -5' |
|||||||
27079 | 5' | -60 | NC_005832.1 | + | 32505 | 0.7 | 0.411142 |
Target: 5'- --cGUGGGUcUUAGGUgCUUgGCGGCCUg -3' miRNA: 3'- cuuCACCCA-AGUCCA-GGGgCGCCGGG- -5' |
|||||||
27079 | 5' | -60 | NC_005832.1 | + | 72780 | 0.76 | 0.19633 |
Target: 5'- ---uUGGGccgUCGGG-CCCCGCGGgCCCa -3' miRNA: 3'- cuucACCCa--AGUCCaGGGGCGCC-GGG- -5' |
|||||||
27079 | 5' | -60 | NC_005832.1 | + | 50509 | 1.1 | 0.000675 |
Target: 5'- uGAAGUGGGUUCAGGUCCCCGCGGCCCu -3' miRNA: 3'- -CUUCACCCAAGUCCAGGGGCGCCGGG- -5' |
|||||||
27079 | 5' | -60 | NC_005832.1 | + | 104140 | 0.66 | 0.67893 |
Target: 5'- cAGGUGGGcaCAGGccauguugucuacCCCCacggcguccgcgGCGGCCCu -3' miRNA: 3'- cUUCACCCaaGUCCa------------GGGG------------CGCCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home