Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2708 | 5' | -56.7 | NC_001491.2 | + | 120652 | 1.06 | 0.003244 |
Target: 5'- aUAGCCGCACACCGUAACCCAGCCAUGc -3' miRNA: 3'- -AUCGGCGUGUGGCAUUGGGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 59693 | 0.72 | 0.521545 |
Target: 5'- cUAGCCGCAUcguggcucugaaaaACCccucUGGCCCAGCCAg- -3' miRNA: 3'- -AUCGGCGUG--------------UGGc---AUUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 116382 | 0.71 | 0.585315 |
Target: 5'- -cGgUGCGCGCCGUucuggugguGGCCCGGaCCGUGg -3' miRNA: 3'- auCgGCGUGUGGCA---------UUGGGUC-GGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 67477 | 0.7 | 0.602827 |
Target: 5'- -uGCCGCGCacgacGCCGUAGCCCuccaguacgagcgcGGCC-UGg -3' miRNA: 3'- auCGGCGUG-----UGGCAUUGGG--------------UCGGuAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 140359 | 0.7 | 0.616264 |
Target: 5'- gGGCCGCGCGCaaucaGUGcgcccgaucuCCCGGCCAc- -3' miRNA: 3'- aUCGGCGUGUGg----CAUu---------GGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 118322 | 0.7 | 0.626615 |
Target: 5'- cAGCCgGCGuCcCCGgcACCCAGCCcgGc -3' miRNA: 3'- aUCGG-CGU-GuGGCauUGGGUCGGuaC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 17666 | 0.7 | 0.63697 |
Target: 5'- -cGCCGUACAgCGcGGCCCcGGCCAa- -3' miRNA: 3'- auCGGCGUGUgGCaUUGGG-UCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 15479 | 0.69 | 0.667978 |
Target: 5'- -cGCCGCgcGCGCCGUGAUgCUGGuCCAUGu -3' miRNA: 3'- auCGGCG--UGUGGCAUUG-GGUC-GGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 140166 | 0.69 | 0.688516 |
Target: 5'- -uGCCGCGCuCCGUGggggacuuuGCCgCGGUCGUGc -3' miRNA: 3'- auCGGCGUGuGGCAU---------UGG-GUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 106154 | 0.69 | 0.708862 |
Target: 5'- cGGCCaGaCACGCCaGUGaACgCGGCCAUGg -3' miRNA: 3'- aUCGG-C-GUGUGG-CAU-UGgGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 124455 | 0.68 | 0.722951 |
Target: 5'- cAGCCGCGCGCaCGUGucugcagaaaACCCcgaagacacccccguGGCCGUu -3' miRNA: 3'- aUCGGCGUGUG-GCAU----------UGGG---------------UCGGUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 83062 | 0.68 | 0.728942 |
Target: 5'- -cGCCGCGggaaAUCGUAGCCUGGCCc-- -3' miRNA: 3'- auCGGCGUg---UGGCAUUGGGUCGGuac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 140086 | 0.68 | 0.738858 |
Target: 5'- gGGCCGCcCGCgGaGGCCUGGCCGc- -3' miRNA: 3'- aUCGGCGuGUGgCaUUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 98963 | 0.68 | 0.748679 |
Target: 5'- gAGUCGCAUACCGcGGCuaCCAGCgGUa -3' miRNA: 3'- aUCGGCGUGUGGCaUUG--GGUCGgUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 49508 | 0.68 | 0.748679 |
Target: 5'- -uGuCCGcCAUACCG-AGgCCGGCCAUGg -3' miRNA: 3'- auC-GGC-GUGUGGCaUUgGGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 100945 | 0.68 | 0.758395 |
Target: 5'- cGGCgGCAgACgGgaguACCCAGCCcgGu -3' miRNA: 3'- aUCGgCGUgUGgCau--UGGGUCGGuaC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 141583 | 0.68 | 0.767997 |
Target: 5'- gGGCCcuGCGC-CCGU-ACCUGGCCcgGg -3' miRNA: 3'- aUCGG--CGUGuGGCAuUGGGUCGGuaC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 52134 | 0.68 | 0.767997 |
Target: 5'- -uGCCGCACcucACCGUcuacuuuaAGCUC-GCCAUGa -3' miRNA: 3'- auCGGCGUG---UGGCA--------UUGGGuCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 120737 | 0.67 | 0.78682 |
Target: 5'- --aCCGUGCcaacuaguggguACCGUGACCCGGCCc-- -3' miRNA: 3'- aucGGCGUG------------UGGCAUUGGGUCGGuac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 95204 | 0.67 | 0.78682 |
Target: 5'- -cGCCGCGCGCCGaAGCcaagaaauccaCCAGCUg-- -3' miRNA: 3'- auCGGCGUGUGGCaUUG-----------GGUCGGuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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