Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2708 | 5' | -56.7 | NC_001491.2 | + | 13944 | 0.66 | 0.839588 |
Target: 5'- gUAGCCGCugguauagcGCGCCGggGCUggCGGCCuUGg -3' miRNA: 3'- -AUCGGCG---------UGUGGCauUGG--GUCGGuAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 15479 | 0.69 | 0.667978 |
Target: 5'- -cGCCGCgcGCGCCGUGAUgCUGGuCCAUGu -3' miRNA: 3'- auCGGCG--UGUGGCAUUG-GGUC-GGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 17666 | 0.7 | 0.63697 |
Target: 5'- -cGCCGUACAgCGcGGCCCcGGCCAa- -3' miRNA: 3'- auCGGCGUGUgGCaUUGGG-UCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 21667 | 0.66 | 0.8371 |
Target: 5'- gGGCCGCgGCACUGgcGCUggucguucucaucaCAGCCGUc -3' miRNA: 3'- aUCGGCG-UGUGGCauUGG--------------GUCGGUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 24826 | 0.66 | 0.847753 |
Target: 5'- --uUCGUAC-CCG--ACCCAGCCGUGc -3' miRNA: 3'- aucGGCGUGuGGCauUGGGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 49456 | 0.66 | 0.847753 |
Target: 5'- -cGCgGCGCAgCGgggAACCCcGCCGUc -3' miRNA: 3'- auCGgCGUGUgGCa--UUGGGuCGGUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 49508 | 0.68 | 0.748679 |
Target: 5'- -uGuCCGcCAUACCG-AGgCCGGCCAUGg -3' miRNA: 3'- auC-GGC-GUGUGGCaUUgGGUCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 52134 | 0.68 | 0.767997 |
Target: 5'- -uGCCGCACcucACCGUcuacuuuaAGCUC-GCCAUGa -3' miRNA: 3'- auCGGCGUG---UGGCA--------UUGGGuCGGUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 59693 | 0.72 | 0.521545 |
Target: 5'- cUAGCCGCAUcguggcucugaaaaACCccucUGGCCCAGCCAg- -3' miRNA: 3'- -AUCGGCGUG--------------UGGc---AUUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 67477 | 0.7 | 0.602827 |
Target: 5'- -uGCCGCGCacgacGCCGUAGCCCuccaguacgagcgcGGCC-UGg -3' miRNA: 3'- auCGGCGUG-----UGGCAUUGGG--------------UCGGuAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 78539 | 0.66 | 0.863477 |
Target: 5'- gGGCCGUACaguuaACC--AGCUCAGCCAg- -3' miRNA: 3'- aUCGGCGUG-----UGGcaUUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 83062 | 0.68 | 0.728942 |
Target: 5'- -cGCCGCGggaaAUCGUAGCCUGGCCc-- -3' miRNA: 3'- auCGGCGUg---UGGCAUUGGGUCGGuac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 85480 | 0.66 | 0.85335 |
Target: 5'- aGGCCGuCGCAUCGUGgauacuggaauuaaACCCAacacGCgCAUGa -3' miRNA: 3'- aUCGGC-GUGUGGCAU--------------UGGGU----CG-GUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 85876 | 0.65 | 0.868781 |
Target: 5'- cGGCCGCcacacACGCCugcaucacggggggGUugaugGACCCGGCCAa- -3' miRNA: 3'- aUCGGCG-----UGUGG--------------CA-----UUGGGUCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 92211 | 0.66 | 0.831229 |
Target: 5'- uUGG-CGUACGCCGUAGCCacggGGCUAa- -3' miRNA: 3'- -AUCgGCGUGUGGCAUUGGg---UCGGUac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 95204 | 0.67 | 0.78682 |
Target: 5'- -cGCCGCGCGCCGaAGCcaagaaauccaCCAGCUg-- -3' miRNA: 3'- auCGGCGUGUGGCaUUG-----------GGUCGGuac -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 95632 | 0.65 | 0.868781 |
Target: 5'- gAGCCGUAucaaaacuaaggccCACCGUuACCaCAGUgGUGu -3' miRNA: 3'- aUCGGCGU--------------GUGGCAuUGG-GUCGgUAC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 98963 | 0.68 | 0.748679 |
Target: 5'- gAGUCGCAUACCGcGGCuaCCAGCgGUa -3' miRNA: 3'- aUCGGCGUGUGGCaUUG--GGUCGgUAc -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 100945 | 0.68 | 0.758395 |
Target: 5'- cGGCgGCAgACgGgaguACCCAGCCcgGu -3' miRNA: 3'- aUCGgCGUgUGgCau--UGGGUCGGuaC- -5' |
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2708 | 5' | -56.7 | NC_001491.2 | + | 106154 | 0.69 | 0.708862 |
Target: 5'- cGGCCaGaCACGCCaGUGaACgCGGCCAUGg -3' miRNA: 3'- aUCGG-C-GUGUGG-CAU-UGgGUCGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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