miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27083 3' -55.8 NC_005832.1 + 1244 0.67 0.789902
Target:  5'- aCGGGGAacauccuGGGCAUCCUCCuguCCCu -3'
miRNA:   3'- -GUCUCUaccuc--UCCGUAGGAGGu--GGG- -5'
27083 3' -55.8 NC_005832.1 + 5703 0.67 0.808313
Target:  5'- gGGAGAcGGuGAccaGGCcgCCUCCguuuucgugGCCCa -3'
miRNA:   3'- gUCUCUaCCuCU---CCGuaGGAGG---------UGGG- -5'
27083 3' -55.8 NC_005832.1 + 5916 0.66 0.826051
Target:  5'- aCGGGGAc-GAG-GGCAaCCUCUACCUc -3'
miRNA:   3'- -GUCUCUacCUCuCCGUaGGAGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 6692 0.68 0.731387
Target:  5'- aGGAGAUaGAcgGGGGCAggaggagCCUCC-CCCa -3'
miRNA:   3'- gUCUCUAcCU--CUCCGUa------GGAGGuGGG- -5'
27083 3' -55.8 NC_005832.1 + 6838 0.77 0.257479
Target:  5'- uGGGGuagugGGGGAGGC-UCCUCCugCCc -3'
miRNA:   3'- gUCUCua---CCUCUCCGuAGGAGGugGG- -5'
27083 3' -55.8 NC_005832.1 + 9045 0.71 0.564972
Target:  5'- uCAGAGGacucgUGGAGGGG-AUCCugcUCCGCCa -3'
miRNA:   3'- -GUCUCU-----ACCUCUCCgUAGG---AGGUGGg -5'
27083 3' -55.8 NC_005832.1 + 10124 0.68 0.731387
Target:  5'- uCAGAGucuAUGGAccugGGGGUGUCC-CUGCCCc -3'
miRNA:   3'- -GUCUC---UACCU----CUCCGUAGGaGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 10192 0.69 0.680041
Target:  5'- aAGGcGGUGGAGAGG-AUCCucaugacuUCCGCCg -3'
miRNA:   3'- gUCU-CUACCUCUCCgUAGG--------AGGUGGg -5'
27083 3' -55.8 NC_005832.1 + 10952 0.68 0.741424
Target:  5'- gGGAGGUGcuGGGAGGCA-CCggcaugacCCACCUc -3'
miRNA:   3'- gUCUCUAC--CUCUCCGUaGGa-------GGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 12025 0.67 0.799187
Target:  5'- aGGAGucuugacgGGGGuGGgAUCCUCuCACCUc -3'
miRNA:   3'- gUCUCua------CCUCuCCgUAGGAG-GUGGG- -5'
27083 3' -55.8 NC_005832.1 + 12794 0.69 0.680041
Target:  5'- uCAGAGucuAUGGucauuGGGGCGUCCgCUauGCCCa -3'
miRNA:   3'- -GUCUC---UACCu----CUCCGUAGGaGG--UGGG- -5'
27083 3' -55.8 NC_005832.1 + 13628 0.71 0.575336
Target:  5'- uCAGAGAgcaagGGAGAGGCGgcgugCagggaggCCGCCUa -3'
miRNA:   3'- -GUCUCUa----CCUCUCCGUa----Gga-----GGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 15441 0.66 0.843046
Target:  5'- cCAGAG--GGAGAGGCccacaucgaaGUCCUgUGCCg -3'
miRNA:   3'- -GUCUCuaCCUCUCCG----------UAGGAgGUGGg -5'
27083 3' -55.8 NC_005832.1 + 19745 0.72 0.5342
Target:  5'- cCAGGGGcuuugGGGGAGGCAggUUCCcCCCg -3'
miRNA:   3'- -GUCUCUa----CCUCUCCGUagGAGGuGGG- -5'
27083 3' -55.8 NC_005832.1 + 19943 0.75 0.365939
Target:  5'- uGGGGGUGGAGguccucgGGGCAUC-UCCAgCCCg -3'
miRNA:   3'- gUCUCUACCUC-------UCCGUAGgAGGU-GGG- -5'
27083 3' -55.8 NC_005832.1 + 20077 0.7 0.617148
Target:  5'- uGGAGAUGcccgcGAGGa--CCUCCACCCc -3'
miRNA:   3'- gUCUCUACcu---CUCCguaGGAGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 20334 0.68 0.75136
Target:  5'- gGGAGAUGGAcaguccGGGGCccUUCUCCGCa- -3'
miRNA:   3'- gUCUCUACCU------CUCCGu-AGGAGGUGgg -5'
27083 3' -55.8 NC_005832.1 + 24708 0.71 0.564972
Target:  5'- aGGAGAgccaUGGAGAucaucGCAUaCCUCCAgCCCa -3'
miRNA:   3'- gUCUCU----ACCUCUc----CGUA-GGAGGU-GGG- -5'
27083 3' -55.8 NC_005832.1 + 27343 0.71 0.554656
Target:  5'- gGGGGAcGGAGuGGCGUCCUaCUuuuuCCCc -3'
miRNA:   3'- gUCUCUaCCUCuCCGUAGGA-GGu---GGG- -5'
27083 3' -55.8 NC_005832.1 + 32336 0.69 0.690432
Target:  5'- cCGGGGcUGGAGGGGgAUCCuugugggcUCCggACCCc -3'
miRNA:   3'- -GUCUCuACCUCUCCgUAGG--------AGG--UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.