miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27083 3' -55.8 NC_005832.1 + 32744 0.67 0.816382
Target:  5'- uGGAGGUGucugcGGGAGGCAggagaaacgUCCUUCccuucagGCCCg -3'
miRNA:   3'- gUCUCUAC-----CUCUCCGU---------AGGAGG-------UGGG- -5'
27083 3' -55.8 NC_005832.1 + 36170 0.68 0.731387
Target:  5'- uGGGGAUGGuuGAGGgGUCagagUCgGCCCu -3'
miRNA:   3'- gUCUCUACCu-CUCCgUAGg---AGgUGGG- -5'
27083 3' -55.8 NC_005832.1 + 6692 0.68 0.731387
Target:  5'- aGGAGAUaGAcgGGGGCAggaggagCCUCC-CCCa -3'
miRNA:   3'- gUCUCUAcCU--CUCCGUa------GGAGGuGGG- -5'
27083 3' -55.8 NC_005832.1 + 10124 0.68 0.731387
Target:  5'- uCAGAGucuAUGGAccugGGGGUGUCC-CUGCCCc -3'
miRNA:   3'- -GUCUC---UACCU----CUCCGUAGGaGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 76278 0.68 0.731387
Target:  5'- gCAGAGA-GGcAGAGGCA-CCUgUGCCa -3'
miRNA:   3'- -GUCUCUaCC-UCUCCGUaGGAgGUGGg -5'
27083 3' -55.8 NC_005832.1 + 1244 0.67 0.789902
Target:  5'- aCGGGGAacauccuGGGCAUCCUCCuguCCCu -3'
miRNA:   3'- -GUCUCUaccuc--UCCGUAGGAGGu--GGG- -5'
27083 3' -55.8 NC_005832.1 + 12025 0.67 0.799187
Target:  5'- aGGAGucuugacgGGGGuGGgAUCCUCuCACCUc -3'
miRNA:   3'- gUCUCua------CCUCuCCgUAGGAG-GUGGG- -5'
27083 3' -55.8 NC_005832.1 + 5703 0.67 0.808313
Target:  5'- gGGAGAcGGuGAccaGGCcgCCUCCguuuucgugGCCCa -3'
miRNA:   3'- gUCUCUaCCuCU---CCGuaGGAGG---------UGGG- -5'
27083 3' -55.8 NC_005832.1 + 101907 0.67 0.808313
Target:  5'- gCAGGGGccagguuuuUGGAGuGGCAUgCguuagagggaCCGCCCa -3'
miRNA:   3'- -GUCUCU---------ACCUCuCCGUAgGa---------GGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 75931 0.68 0.721259
Target:  5'- aGGAGAggGGAGAGGCA-CCggaCCuaaCCg -3'
miRNA:   3'- gUCUCUa-CCUCUCCGUaGGa--GGug-GG- -5'
27083 3' -55.8 NC_005832.1 + 43001 0.68 0.711051
Target:  5'- uCAGGGGUaaaaacaucaGGAuGAGGCAg-CUCCACUCu -3'
miRNA:   3'- -GUCUCUA----------CCU-CUCCGUagGAGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 68054 0.69 0.690432
Target:  5'- aGGAGAggGGcGGAGGCAUCCUgauaCACgCu -3'
miRNA:   3'- gUCUCUa-CC-UCUCCGUAGGAg---GUGgG- -5'
27083 3' -55.8 NC_005832.1 + 43408 0.73 0.446133
Target:  5'- cCAGAGG-GGAuuagGGGGUccagauacgacaAUCCUCCGCCCc -3'
miRNA:   3'- -GUCUCUaCCU----CUCCG------------UAGGAGGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 56376 0.72 0.5342
Target:  5'- aCAGAGGccaGGAGGGGUccuauggcCCUCCugCCg -3'
miRNA:   3'- -GUCUCUa--CCUCUCCGua------GGAGGugGG- -5'
27083 3' -55.8 NC_005832.1 + 19745 0.72 0.5342
Target:  5'- cCAGGGGcuuugGGGGAGGCAggUUCCcCCCg -3'
miRNA:   3'- -GUCUCUa----CCUCUCCGUagGAGGuGGG- -5'
27083 3' -55.8 NC_005832.1 + 27343 0.71 0.554656
Target:  5'- gGGGGAcGGAGuGGCGUCCUaCUuuuuCCCc -3'
miRNA:   3'- gUCUCUaCCUCuCCGUAGGA-GGu---GGG- -5'
27083 3' -55.8 NC_005832.1 + 9045 0.71 0.564972
Target:  5'- uCAGAGGacucgUGGAGGGG-AUCCugcUCCGCCa -3'
miRNA:   3'- -GUCUCU-----ACCUCUCCgUAGG---AGGUGGg -5'
27083 3' -55.8 NC_005832.1 + 13628 0.71 0.575336
Target:  5'- uCAGAGAgcaagGGAGAGGCGgcgugCagggaggCCGCCUa -3'
miRNA:   3'- -GUCUCUa----CCUCUCCGUa----Gga-----GGUGGG- -5'
27083 3' -55.8 NC_005832.1 + 66387 0.69 0.659145
Target:  5'- aGGGGAUGGGGGcuGGCggCCUCC-CUg -3'
miRNA:   3'- gUCUCUACCUCU--CCGuaGGAGGuGGg -5'
27083 3' -55.8 NC_005832.1 + 12794 0.69 0.680041
Target:  5'- uCAGAGucuAUGGucauuGGGGCGUCCgCUauGCCCa -3'
miRNA:   3'- -GUCUC---UACCu----CUCCGUAGGaGG--UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.