Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27083 | 5' | -53.9 | NC_005832.1 | + | 45822 | 0.74 | 0.513781 |
Target: 5'- cUUGuAGAGGACGGCCAUGUaCUcuggACCcCCg -3' miRNA: 3'- -AAC-UCUCUUGCCGGUGCA-GA----UGGaGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 47901 | 0.66 | 0.91861 |
Target: 5'- cUGGccGAGAGgGGCUACGUCgugcagcagUACC-CCa -3' miRNA: 3'- aACU--CUCUUgCCGGUGCAG---------AUGGaGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 48693 | 0.66 | 0.892883 |
Target: 5'- gUGcGGAGucuuuuACGGCaagUACGUCgaaGCCUCCg -3' miRNA: 3'- aAC-UCUCu-----UGCCG---GUGCAGa--UGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 52462 | 0.72 | 0.586603 |
Target: 5'- gUGAGGGuucucacguCGGCCGCauaGUCUgGCCUCCc -3' miRNA: 3'- aACUCUCuu-------GCCGGUG---CAGA-UGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 53797 | 0.67 | 0.855198 |
Target: 5'- -cGGGGGAAaGGCCuACGUCc-CCUUCg -3' miRNA: 3'- aaCUCUCUUgCCGG-UGCAGauGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 53920 | 0.76 | 0.417025 |
Target: 5'- cUGAagGAGGccuGgGGCCACGUC-ACCUCCa -3' miRNA: 3'- aACU--CUCU---UgCCGGUGCAGaUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 54074 | 0.69 | 0.802863 |
Target: 5'- -gGAGGGAcucuGCGGCCAgGUUc-CUUCCg -3' miRNA: 3'- aaCUCUCU----UGCCGGUgCAGauGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 55135 | 1.1 | 0.002382 |
Target: 5'- cUUGAGAGAACGGCCACGUCUACCUCCg -3' miRNA: 3'- -AACUCUCUUGCCGGUGCAGAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 59958 | 0.67 | 0.878518 |
Target: 5'- -aGGGGGuucgucaccAACGuCUGCGUCUACUUCCa -3' miRNA: 3'- aaCUCUC---------UUGCcGGUGCAGAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 64349 | 0.68 | 0.812058 |
Target: 5'- -cGGGAGGguaaACGGCCACauucaccccagaGUCUGgCUUCa -3' miRNA: 3'- aaCUCUCU----UGCCGGUG------------CAGAUgGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 66785 | 0.67 | 0.8632 |
Target: 5'- cUGAGAGAccugacacagcACGgacGCCACGUucCUGCC-CCu -3' miRNA: 3'- aACUCUCU-----------UGC---CGGUGCA--GAUGGaGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 79887 | 0.76 | 0.390222 |
Target: 5'- -gGAGAGGGCGGCCAUG---GCCUCg -3' miRNA: 3'- aaCUCUCUUGCCGGUGCagaUGGAGg -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 80581 | 0.68 | 0.824632 |
Target: 5'- -aGGGAGAuuacgggcauccuggACGGCgCAUGcgaggcCUGCCUCCu -3' miRNA: 3'- aaCUCUCU---------------UGCCG-GUGCa-----GAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 87247 | 0.66 | 0.9244 |
Target: 5'- -gGAGAGccuGAgGGCCauggucaagGCGUCUGgaaacuggcCCUCCa -3' miRNA: 3'- aaCUCUC---UUgCCGG---------UGCAGAU---------GGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 87350 | 0.7 | 0.744513 |
Target: 5'- -gGuGAGggUGGCCcUGUCUACgUUCa -3' miRNA: 3'- aaCuCUCuuGCCGGuGCAGAUGgAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 87695 | 0.68 | 0.812058 |
Target: 5'- gUGAaaGuGGACGGUCACGUUUACgauacgccgCUCCa -3' miRNA: 3'- aACU--CuCUUGCCGGUGCAGAUG---------GAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 88146 | 0.66 | 0.9244 |
Target: 5'- -cGAGAGGACccuGGCCAgGcUCcuggACCUuCCa -3' miRNA: 3'- aaCUCUCUUG---CCGGUgC-AGa---UGGA-GG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 92543 | 0.77 | 0.348129 |
Target: 5'- -cGAcGGGGACGGCuCugGgCUGCCUCCu -3' miRNA: 3'- aaCU-CUCUUGCCG-GugCaGAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 94816 | 0.67 | 0.8632 |
Target: 5'- -cGGGAGGACccugucuaGGCUAaaGUCUgcgGCCUCCa -3' miRNA: 3'- aaCUCUCUUG--------CCGGUg-CAGA---UGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 95084 | 0.69 | 0.802863 |
Target: 5'- -aGAGAuuGCGGCCACGggUAUgaCUCCu -3' miRNA: 3'- aaCUCUcuUGCCGGUGCagAUG--GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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