miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27083 5' -53.9 NC_005832.1 + 817 0.68 0.833386
Target:  5'- cUGAGAGGugcagaagcccgaGGCgCACGUCUGCUcCCc -3'
miRNA:   3'- aACUCUCUug-----------CCG-GUGCAGAUGGaGG- -5'
27083 5' -53.9 NC_005832.1 + 1195 0.69 0.802863
Target:  5'- -aGGcGAGAA-GGCCAUGgcgACCUCCg -3'
miRNA:   3'- aaCU-CUCUUgCCGGUGCagaUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 2517 0.68 0.846977
Target:  5'- gUGGGAGcccccGACGGCCuCGUgUcCUUCCa -3'
miRNA:   3'- aACUCUC-----UUGCCGGuGCAgAuGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 5833 0.66 0.91861
Target:  5'- --cGGAG-GCGGCCugGUC-ACCgucUCCc -3'
miRNA:   3'- aacUCUCuUGCCGGugCAGaUGG---AGG- -5'
27083 5' -53.9 NC_005832.1 + 6682 0.69 0.774308
Target:  5'- gUGuGAGuGCGGCgCACGUC-ACCgCCu -3'
miRNA:   3'- aACuCUCuUGCCG-GUGCAGaUGGaGG- -5'
27083 5' -53.9 NC_005832.1 + 7533 0.66 0.912562
Target:  5'- -cGAGGGcACGGaccCCGCGUCguccagccacCCUCCc -3'
miRNA:   3'- aaCUCUCuUGCC---GGUGCAGau--------GGAGG- -5'
27083 5' -53.9 NC_005832.1 + 7604 0.69 0.7645
Target:  5'- -gGAGGGGuccaccuucaGCGGCacCACGcaCUGCCUCCu -3'
miRNA:   3'- aaCUCUCU----------UGCCG--GUGCa-GAUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 10812 0.66 0.906256
Target:  5'- ---uGAGGugGGUCAUGcCggUGCCUCCc -3'
miRNA:   3'- aacuCUCUugCCGGUGCaG--AUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 15519 0.68 0.846977
Target:  5'- cUUGAGgcAGAuUGGCCugGgc-ACCUCCa -3'
miRNA:   3'- -AACUC--UCUuGCCGGugCagaUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 16869 0.71 0.692856
Target:  5'- aUGAGGGcAACGGUCAUGUaaacguugGCCUCg -3'
miRNA:   3'- aACUCUC-UUGCCGGUGCAga------UGGAGg -5'
27083 5' -53.9 NC_005832.1 + 17173 0.69 0.802863
Target:  5'- -aGAGAcAGCGGCCugGcccugccaguugUCUcCCUCCc -3'
miRNA:   3'- aaCUCUcUUGCCGGugC------------AGAuGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 19459 0.69 0.783978
Target:  5'- aUGAGAaGGCGGCCugGgagUCUuggcugcggaACCUCUg -3'
miRNA:   3'- aACUCUcUUGCCGGugC---AGA----------UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 22733 0.66 0.908809
Target:  5'- -gGGGAGGauuugccccuguuccAUGGCCACGUC-GCagaaaUCCa -3'
miRNA:   3'- aaCUCUCU---------------UGCCGGUGCAGaUGg----AGG- -5'
27083 5' -53.9 NC_005832.1 + 23559 0.67 0.8632
Target:  5'- -aGAGGGGGCGGgCAagcCGUUUACuCUCa -3'
miRNA:   3'- aaCUCUCUUGCCgGU---GCAGAUG-GAGg -5'
27083 5' -53.9 NC_005832.1 + 25545 0.7 0.713756
Target:  5'- cUGGGAG-ACGcUCACGUCUACCUg- -3'
miRNA:   3'- aACUCUCuUGCcGGUGCAGAUGGAgg -5'
27083 5' -53.9 NC_005832.1 + 29726 0.68 0.850291
Target:  5'- -gGAGAGGuuccuggacuccaggACGGCUGcCGUgUGCCUCa -3'
miRNA:   3'- aaCUCUCU---------------UGCCGGU-GCAgAUGGAGg -5'
27083 5' -53.9 NC_005832.1 + 32588 0.71 0.671737
Target:  5'- gUGGccGAcuuuGCGGCCAgGUaCUGCCUCCu -3'
miRNA:   3'- aACUcuCU----UGCCGGUgCA-GAUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 36054 0.73 0.576035
Target:  5'- -cGAGGGGugGGCCGgGUggACgCUCCu -3'
miRNA:   3'- aaCUCUCUugCCGGUgCAgaUG-GAGG- -5'
27083 5' -53.9 NC_005832.1 + 39882 0.7 0.703339
Target:  5'- -aGGGAGAcgACGGUCcCGUCUACCcaaagggagCCa -3'
miRNA:   3'- aaCUCUCU--UGCCGGuGCAGAUGGa--------GG- -5'
27083 5' -53.9 NC_005832.1 + 41426 0.66 0.9244
Target:  5'- -cGAGGGcgccucccuGACGGCgGCGgccuCCUCCu -3'
miRNA:   3'- aaCUCUC---------UUGCCGgUGCagauGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.