miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27083 5' -53.9 NC_005832.1 + 22733 0.66 0.908809
Target:  5'- -gGGGAGGauuugccccuguuccAUGGCCACGUC-GCagaaaUCCa -3'
miRNA:   3'- aaCUCUCU---------------UGCCGGUGCAGaUGg----AGG- -5'
27083 5' -53.9 NC_005832.1 + 2517 0.68 0.846977
Target:  5'- gUGGGAGcccccGACGGCCuCGUgUcCUUCCa -3'
miRNA:   3'- aACUCUC-----UUGCCGGuGCAgAuGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 15519 0.68 0.846977
Target:  5'- cUUGAGgcAGAuUGGCCugGgc-ACCUCCa -3'
miRNA:   3'- -AACUC--UCUuGCCGGugCagaUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 29726 0.68 0.850291
Target:  5'- -gGAGAGGuuccuggacuccaggACGGCUGcCGUgUGCCUCa -3'
miRNA:   3'- aaCUCUCU---------------UGCCGGU-GCAgAUGGAGg -5'
27083 5' -53.9 NC_005832.1 + 53797 0.67 0.855198
Target:  5'- -cGGGGGAAaGGCCuACGUCc-CCUUCg -3'
miRNA:   3'- aaCUCUCUUgCCGG-UGCAGauGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 94816 0.67 0.8632
Target:  5'- -cGGGAGGACccugucuaGGCUAaaGUCUgcgGCCUCCa -3'
miRNA:   3'- aaCUCUCUUG--------CCGGUg-CAGA---UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 59958 0.67 0.878518
Target:  5'- -aGGGGGuucgucaccAACGuCUGCGUCUACUUCCa -3'
miRNA:   3'- aaCUCUC---------UUGCcGGUGCAGAUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 48693 0.66 0.892883
Target:  5'- gUGcGGAGucuuuuACGGCaagUACGUCgaaGCCUCCg -3'
miRNA:   3'- aAC-UCUCu-----UGCCG---GUGCAGa--UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 10812 0.66 0.906256
Target:  5'- ---uGAGGugGGUCAUGcCggUGCCUCCc -3'
miRNA:   3'- aacuCUCUugCCGGUGCaG--AUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 817 0.68 0.833386
Target:  5'- cUGAGAGGugcagaagcccgaGGCgCACGUCUGCUcCCc -3'
miRNA:   3'- aACUCUCUug-----------CCG-GUGCAGAUGGaGG- -5'
27083 5' -53.9 NC_005832.1 + 80581 0.68 0.824632
Target:  5'- -aGGGAGAuuacgggcauccuggACGGCgCAUGcgaggcCUGCCUCCu -3'
miRNA:   3'- aaCUCUCU---------------UGCCG-GUGCa-----GAUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 87695 0.68 0.812058
Target:  5'- gUGAaaGuGGACGGUCACGUUUACgauacgccgCUCCa -3'
miRNA:   3'- aACU--CuCUUGCCGGUGCAGAUG---------GAGG- -5'
27083 5' -53.9 NC_005832.1 + 53920 0.76 0.417025
Target:  5'- cUGAagGAGGccuGgGGCCACGUC-ACCUCCa -3'
miRNA:   3'- aACU--CUCU---UgCCGGUGCAGaUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 45822 0.74 0.513781
Target:  5'- cUUGuAGAGGACGGCCAUGUaCUcuggACCcCCg -3'
miRNA:   3'- -AAC-UCUCUUGCCGGUGCA-GA----UGGaGG- -5'
27083 5' -53.9 NC_005832.1 + 36054 0.73 0.576035
Target:  5'- -cGAGGGGugGGCCGgGUggACgCUCCu -3'
miRNA:   3'- aaCUCUCUugCCGGUgCAgaUG-GAGG- -5'
27083 5' -53.9 NC_005832.1 + 52462 0.72 0.586603
Target:  5'- gUGAGGGuucucacguCGGCCGCauaGUCUgGCCUCCc -3'
miRNA:   3'- aACUCUCuu-------GCCGGUG---CAGA-UGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 16869 0.71 0.692856
Target:  5'- aUGAGGGcAACGGUCAUGUaaacguugGCCUCg -3'
miRNA:   3'- aACUCUC-UUGCCGGUGCAga------UGGAGg -5'
27083 5' -53.9 NC_005832.1 + 39882 0.7 0.703339
Target:  5'- -aGGGAGAcgACGGUCcCGUCUACCcaaagggagCCa -3'
miRNA:   3'- aaCUCUCU--UGCCGGuGCAGAUGGa--------GG- -5'
27083 5' -53.9 NC_005832.1 + 1195 0.69 0.802863
Target:  5'- -aGGcGAGAA-GGCCAUGgcgACCUCCg -3'
miRNA:   3'- aaCU-CUCUUgCCGGUGCagaUGGAGG- -5'
27083 5' -53.9 NC_005832.1 + 54074 0.69 0.802863
Target:  5'- -gGAGGGAcucuGCGGCCAgGUUc-CUUCCg -3'
miRNA:   3'- aaCUCUCU----UGCCGGUgCAGauGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.