Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27083 | 5' | -53.9 | NC_005832.1 | + | 55135 | 1.1 | 0.002382 |
Target: 5'- cUUGAGAGAACGGCCACGUCUACCUCCg -3' miRNA: 3'- -AACUCUCUUGCCGGUGCAGAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 92543 | 0.77 | 0.348129 |
Target: 5'- -cGAcGGGGACGGCuCugGgCUGCCUCCu -3' miRNA: 3'- aaCU-CUCUUGCCG-GugCaGAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 79887 | 0.76 | 0.390222 |
Target: 5'- -gGAGAGGGCGGCCAUG---GCCUCg -3' miRNA: 3'- aaCUCUCUUGCCGGUGCagaUGGAGg -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 53920 | 0.76 | 0.417025 |
Target: 5'- cUGAagGAGGccuGgGGCCACGUC-ACCUCCa -3' miRNA: 3'- aACU--CUCU---UgCCGGUGCAGaUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 45822 | 0.74 | 0.513781 |
Target: 5'- cUUGuAGAGGACGGCCAUGUaCUcuggACCcCCg -3' miRNA: 3'- -AAC-UCUCUUGCCGGUGCA-GA----UGGaGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 36054 | 0.73 | 0.576035 |
Target: 5'- -cGAGGGGugGGCCGgGUggACgCUCCu -3' miRNA: 3'- aaCUCUCUugCCGGUgCAgaUG-GAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 52462 | 0.72 | 0.586603 |
Target: 5'- gUGAGGGuucucacguCGGCCGCauaGUCUgGCCUCCc -3' miRNA: 3'- aACUCUCuu-------GCCGGUG---CAGA-UGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 32588 | 0.71 | 0.671737 |
Target: 5'- gUGGccGAcuuuGCGGCCAgGUaCUGCCUCCu -3' miRNA: 3'- aACUcuCU----UGCCGGUgCA-GAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 16869 | 0.71 | 0.692856 |
Target: 5'- aUGAGGGcAACGGUCAUGUaaacguugGCCUCg -3' miRNA: 3'- aACUCUC-UUGCCGGUGCAga------UGGAGg -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 39882 | 0.7 | 0.703339 |
Target: 5'- -aGGGAGAcgACGGUCcCGUCUACCcaaagggagCCa -3' miRNA: 3'- aaCUCUCU--UGCCGGuGCAGAUGGa--------GG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 25545 | 0.7 | 0.713756 |
Target: 5'- cUGGGAG-ACGcUCACGUCUACCUg- -3' miRNA: 3'- aACUCUCuUGCcGGUGCAGAUGGAgg -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 87350 | 0.7 | 0.744513 |
Target: 5'- -gGuGAGggUGGCCcUGUCUACgUUCa -3' miRNA: 3'- aaCuCUCuuGCCGGuGCAGAUGgAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 7604 | 0.69 | 0.7645 |
Target: 5'- -gGAGGGGuccaccuucaGCGGCacCACGcaCUGCCUCCu -3' miRNA: 3'- aaCUCUCU----------UGCCG--GUGCa-GAUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 6682 | 0.69 | 0.774308 |
Target: 5'- gUGuGAGuGCGGCgCACGUC-ACCgCCu -3' miRNA: 3'- aACuCUCuUGCCG-GUGCAGaUGGaGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 19459 | 0.69 | 0.783978 |
Target: 5'- aUGAGAaGGCGGCCugGgagUCUuggcugcggaACCUCUg -3' miRNA: 3'- aACUCUcUUGCCGGugC---AGA----------UGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 95084 | 0.69 | 0.802863 |
Target: 5'- -aGAGAuuGCGGCCACGggUAUgaCUCCu -3' miRNA: 3'- aaCUCUcuUGCCGGUGCagAUG--GAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 17173 | 0.69 | 0.802863 |
Target: 5'- -aGAGAcAGCGGCCugGcccugccaguugUCUcCCUCCc -3' miRNA: 3'- aaCUCUcUUGCCGGugC------------AGAuGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 54074 | 0.69 | 0.802863 |
Target: 5'- -gGAGGGAcucuGCGGCCAgGUUc-CUUCCg -3' miRNA: 3'- aaCUCUCU----UGCCGGUgCAGauGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 1195 | 0.69 | 0.802863 |
Target: 5'- -aGGcGAGAA-GGCCAUGgcgACCUCCg -3' miRNA: 3'- aaCU-CUCUUgCCGGUGCagaUGGAGG- -5' |
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27083 | 5' | -53.9 | NC_005832.1 | + | 87695 | 0.68 | 0.812058 |
Target: 5'- gUGAaaGuGGACGGUCACGUUUACgauacgccgCUCCa -3' miRNA: 3'- aACU--CuCUUGCCGGUGCAGAUG---------GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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