miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27097 5' -57.1 NC_005832.1 + 80680 0.66 0.854108
Target:  5'- cCCGUCUACgaggACccCGUCcccuccaGGGCCCUGg -3'
miRNA:   3'- -GGCAGGUGa---UGcuGCAGc------CCUGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 23277 0.66 0.846232
Target:  5'- gUGUCCACUcACGGacacUUGGGAUCCUu -3'
miRNA:   3'- gGCAGGUGA-UGCUgc--AGCCCUGGGAc -5'
27097 5' -57.1 NC_005832.1 + 15436 0.66 0.82991
Target:  5'- aUGUCCAgaGCGucaauuaggaccACGcCGGcGACCCUGc -3'
miRNA:   3'- gGCAGGUgaUGC------------UGCaGCC-CUGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 5542 0.66 0.812876
Target:  5'- cUCGUCCACUccAgGGugcCGUCuGGACCCa- -3'
miRNA:   3'- -GGCAGGUGA--UgCU---GCAGcCCUGGGac -5'
27097 5' -57.1 NC_005832.1 + 32407 0.66 0.812876
Target:  5'- gUGUCC-CgugGCGACuGgcucCGGGGCCCUa -3'
miRNA:   3'- gGCAGGuGa--UGCUG-Ca---GCCCUGGGAc -5'
27097 5' -57.1 NC_005832.1 + 9475 0.67 0.804111
Target:  5'- cCCGUCUg--ACGGCGUUGaGGgucuugccgucgGCCCUGg -3'
miRNA:   3'- -GGCAGGugaUGCUGCAGC-CC------------UGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 67012 0.67 0.776924
Target:  5'- aCGUcCCGCUGCGAgGgcccuggCGGcGGCCgUGg -3'
miRNA:   3'- gGCA-GGUGAUGCUgCa------GCC-CUGGgAC- -5'
27097 5' -57.1 NC_005832.1 + 1934 0.67 0.767593
Target:  5'- gCCG-CCGCacagACGACGUCuuucccaagaGGGGCCUg- -3'
miRNA:   3'- -GGCaGGUGa---UGCUGCAG----------CCCUGGGac -5'
27097 5' -57.1 NC_005832.1 + 72557 0.67 0.758142
Target:  5'- aCgGUCCcCgugGgGACGUgGGGcCCCUGg -3'
miRNA:   3'- -GgCAGGuGa--UgCUGCAgCCCuGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 67929 0.67 0.758142
Target:  5'- gUCGUCCGCUaucaAUGACGcUCcucGGCCCUGa -3'
miRNA:   3'- -GGCAGGUGA----UGCUGC-AGcc-CUGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 71015 0.68 0.748582
Target:  5'- cCCGUUgGggcuCUGCGAUGUCccguuGGGGCUCUGc -3'
miRNA:   3'- -GGCAGgU----GAUGCUGCAG-----CCCUGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 4835 0.68 0.748582
Target:  5'- cCCGuacUCUGCgUGCGACGcgugUGGGGCCCa- -3'
miRNA:   3'- -GGC---AGGUG-AUGCUGCa---GCCCUGGGac -5'
27097 5' -57.1 NC_005832.1 + 23369 0.68 0.742796
Target:  5'- gCGUCCACgccgaaaaGAUGUCcaggcucauuaagauGGGACCCUu -3'
miRNA:   3'- gGCAGGUGaug-----CUGCAG---------------CCCUGGGAc -5'
27097 5' -57.1 NC_005832.1 + 73164 0.68 0.733077
Target:  5'- -aGUCUuCUGCGacgacgcuaccuggcGCGUCGGGGCCUUu -3'
miRNA:   3'- ggCAGGuGAUGC---------------UGCAGCCCUGGGAc -5'
27097 5' -57.1 NC_005832.1 + 20387 0.68 0.709417
Target:  5'- -aGUCCugguuUGGCGUCuGGGAUCCUGa -3'
miRNA:   3'- ggCAGGugau-GCUGCAG-CCCUGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 35678 0.68 0.708422
Target:  5'- -aGUCUGCUcagcuuuGCGACG-CGGGAuCCCUa -3'
miRNA:   3'- ggCAGGUGA-------UGCUGCaGCCCU-GGGAc -5'
27097 5' -57.1 NC_005832.1 + 5571 0.69 0.69944
Target:  5'- uUGUCgGCUAUGGCuUCGGGcACCCc- -3'
miRNA:   3'- gGCAGgUGAUGCUGcAGCCC-UGGGac -5'
27097 5' -57.1 NC_005832.1 + 29414 0.69 0.668197
Target:  5'- gCCGUacagCAgUACGcacgagaGCGcCGGGACCCUGc -3'
miRNA:   3'- -GGCAg---GUgAUGC-------UGCaGCCCUGGGAC- -5'
27097 5' -57.1 NC_005832.1 + 49314 0.7 0.618339
Target:  5'- --uUCCGCaaACGccACGUCGGGACCCa- -3'
miRNA:   3'- ggcAGGUGa-UGC--UGCAGCCCUGGGac -5'
27097 5' -57.1 NC_005832.1 + 87814 0.7 0.612233
Target:  5'- aCCGUCCACUuucacuggccccccuGCGAaagucaggaCGUgCGGGACCUc- -3'
miRNA:   3'- -GGCAGGUGA---------------UGCU---------GCA-GCCCUGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.