miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27099 3' -56.5 NC_005832.1 + 89571 0.66 0.84319
Target:  5'- aGGGGGGCcGUCagccugucgaGCUUCCUCgUGaugUCCg -3'
miRNA:   3'- -CCUCUCGuCAG----------UGGAGGAGgACg--AGG- -5'
27099 3' -56.5 NC_005832.1 + 10310 0.66 0.839052
Target:  5'- gGGAGAggcggugGCAGUCACCgUCCacaggcugguggCUGUUCCc -3'
miRNA:   3'- -CCUCU-------CGUCAGUGG-AGGag----------GACGAGG- -5'
27099 3' -56.5 NC_005832.1 + 100585 0.66 0.834865
Target:  5'- aGGGGGaCGGUCACCggCUCgUcCUCCa -3'
miRNA:   3'- cCUCUC-GUCAGUGGagGAGgAcGAGG- -5'
27099 3' -56.5 NC_005832.1 + 29432 0.66 0.834865
Target:  5'- cGAGAGCgccGGgacCCUgCUCCUGCcCCu -3'
miRNA:   3'- cCUCUCG---UCaguGGAgGAGGACGaGG- -5'
27099 3' -56.5 NC_005832.1 + 52968 0.66 0.826349
Target:  5'- cGGcGAGaaGGUCugCUCCUUugagCUGCUCa -3'
miRNA:   3'- -CCuCUCg-UCAGugGAGGAG----GACGAGg -5'
27099 3' -56.5 NC_005832.1 + 102817 0.66 0.826349
Target:  5'- cGAGAGCAGggugaACgCUCCUCagcuuagGcCUCCg -3'
miRNA:   3'- cCUCUCGUCag---UG-GAGGAGga-----C-GAGG- -5'
27099 3' -56.5 NC_005832.1 + 31296 0.66 0.826349
Target:  5'- -cGGAGCAGgCACCacCCUCCU--UCCa -3'
miRNA:   3'- ccUCUCGUCaGUGGa-GGAGGAcgAGG- -5'
27099 3' -56.5 NC_005832.1 + 90907 0.67 0.79054
Target:  5'- cGAGGGCGG--GCC-CCUCaggagGCUCCu -3'
miRNA:   3'- cCUCUCGUCagUGGaGGAGga---CGAGG- -5'
27099 3' -56.5 NC_005832.1 + 86328 0.67 0.781195
Target:  5'- ---aGGCGG-CugCUCCUCUUGCUgCu -3'
miRNA:   3'- ccucUCGUCaGugGAGGAGGACGAgG- -5'
27099 3' -56.5 NC_005832.1 + 835 0.67 0.742526
Target:  5'- cGAGGcGCAcGUCugCUCCcCCagGUUCCa -3'
miRNA:   3'- cCUCU-CGU-CAGugGAGGaGGa-CGAGG- -5'
27099 3' -56.5 NC_005832.1 + 54322 0.68 0.712442
Target:  5'- gGGAGAGUccuUgGCCuugaUCCUCCUGUUUCu -3'
miRNA:   3'- -CCUCUCGuc-AgUGG----AGGAGGACGAGG- -5'
27099 3' -56.5 NC_005832.1 + 6838 0.68 0.712442
Target:  5'- uGGGGuAGUGGgggaGgCUCCUCCUGCcCCc -3'
miRNA:   3'- -CCUC-UCGUCag--UgGAGGAGGACGaGG- -5'
27099 3' -56.5 NC_005832.1 + 85539 0.68 0.711426
Target:  5'- uGGAGAGCGcGUCuucgucaaugACCUgcUCUCCUGUagccucgUCCa -3'
miRNA:   3'- -CCUCUCGU-CAG----------UGGA--GGAGGACG-------AGG- -5'
27099 3' -56.5 NC_005832.1 + 55591 0.68 0.702259
Target:  5'- aGGAGGGCAGaggcggucagCGCCgccccagccaCUCCcGCUCCc -3'
miRNA:   3'- -CCUCUCGUCa---------GUGGag--------GAGGaCGAGG- -5'
27099 3' -56.5 NC_005832.1 + 31170 0.68 0.692015
Target:  5'- aGGAGGGUGGU-GCCUgCUCCgaGCcCCa -3'
miRNA:   3'- -CCUCUCGUCAgUGGAgGAGGa-CGaGG- -5'
27099 3' -56.5 NC_005832.1 + 90621 0.68 0.690987
Target:  5'- --cGAGCaccucagAGUCuaGCCUCCUCa-GCUCCg -3'
miRNA:   3'- ccuCUCG-------UCAG--UGGAGGAGgaCGAGG- -5'
27099 3' -56.5 NC_005832.1 + 1613 0.69 0.685843
Target:  5'- uGGAG-GCAGUugucCACCgUCUCCucggaaggggaaaagUGCUCCa -3'
miRNA:   3'- -CCUCuCGUCA----GUGGaGGAGG---------------ACGAGG- -5'
27099 3' -56.5 NC_005832.1 + 29497 0.69 0.681719
Target:  5'- aGAGAGCcGUC-CCUCC-CCUGgauauagcCUCCc -3'
miRNA:   3'- cCUCUCGuCAGuGGAGGaGGAC--------GAGG- -5'
27099 3' -56.5 NC_005832.1 + 63386 0.69 0.671381
Target:  5'- --cGAGC-GUCuuacugauccGCCUCCUCCUcCUCCu -3'
miRNA:   3'- ccuCUCGuCAG----------UGGAGGAGGAcGAGG- -5'
27099 3' -56.5 NC_005832.1 + 32547 0.69 0.668273
Target:  5'- -uGGAGCGGUC-CCguugacguugauggUCCUCCUGaugucCUCCg -3'
miRNA:   3'- ccUCUCGUCAGuGG--------------AGGAGGAC-----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.