Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2710 | 3' | -54.2 | NC_001491.2 | + | 123926 | 0.69 | 0.866362 |
Target: 5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3' miRNA: 3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 124258 | 0.69 | 0.866362 |
Target: 5'- cCCUCuaguGCCUAUCAcacacuacucgGUCCC-ACuCAUCCCa -3' miRNA: 3'- -GGAG----UGGGUGGU-----------UAGGGaUG-GUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149803 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149767 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149731 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149695 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149659 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149623 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149587 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149551 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149515 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149479 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149443 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 149407 | 0.7 | 0.842949 |
Target: 5'- aCC-CGCCCAUCAAcccgCCCaucaACCcgCCCa -3' miRNA: 3'- -GGaGUGGGUGGUUa---GGGa---UGGuaGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 5041 | 0.7 | 0.842949 |
Target: 5'- aCCaaaaACCUACCAAUgcgcaccagagaCCCUAUCAUCUCu -3' miRNA: 3'- -GGag--UGGGUGGUUA------------GGGAUGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 124875 | 0.7 | 0.826369 |
Target: 5'- gCUCAgCUACUccgCCCUGCCGcugCCCa -3' miRNA: 3'- gGAGUgGGUGGuuaGGGAUGGUa--GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 119840 | 0.7 | 0.826369 |
Target: 5'- --aCGCCCACCuuUCCCccuccCCcUCCCa -3' miRNA: 3'- ggaGUGGGUGGuuAGGGau---GGuAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 1793 | 0.7 | 0.826369 |
Target: 5'- gCUCGCCguCCAcgCCCgcgGCCGcucugCCCc -3' miRNA: 3'- gGAGUGGguGGUuaGGGa--UGGUa----GGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 99148 | 0.7 | 0.81781 |
Target: 5'- cCCUCuGCCCA-CAGUCUCUgucgagcaagcuGCCGUUCCu -3' miRNA: 3'- -GGAG-UGGGUgGUUAGGGA------------UGGUAGGG- -5' |
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2710 | 3' | -54.2 | NC_001491.2 | + | 116132 | 0.7 | 0.809081 |
Target: 5'- aCC-CugCCGCCccuguggCCC-ACCGUCCCc -3' miRNA: 3'- -GGaGugGGUGGuua----GGGaUGGUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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