miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 38435 0.67 0.416067
Target:  5'- ---aGGGAGAuGGacugcuccaCCCUGCCCGGGCUa -3'
miRNA:   3'- cuccUCCUCUuCC---------GGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 38587 0.68 0.382849
Target:  5'- aAGGAGG-GAccuGGCUa-GCCCGGGCa -3'
miRNA:   3'- cUCCUCCuCUu--CCGGggUGGGCCCGg -5'
27126 3' -63.4 NC_005832.1 + 39772 0.67 0.398407
Target:  5'- uGAGGGGGucuaGAGGCCCC-CCggagcggUGGGUCc -3'
miRNA:   3'- -CUCCUCCuc--UUCCGGGGuGG-------GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 41573 0.73 0.192534
Target:  5'- uGAGGccgAGGAGGAGGCCgCCGCCgucagggaGGcGCCc -3'
miRNA:   3'- -CUCC---UCCUCUUCCGG-GGUGGg-------CC-CGG- -5'
27126 3' -63.4 NC_005832.1 + 44126 0.66 0.487463
Target:  5'- aAGGAcgGGAGGAGGUCCCGC--GGGaCUg -3'
miRNA:   3'- cUCCU--CCUCUUCCGGGGUGggCCC-GG- -5'
27126 3' -63.4 NC_005832.1 + 46269 0.66 0.496799
Target:  5'- gGAGGAGGAaaGAcGGaagaCaCCGCCUuGGCCa -3'
miRNA:   3'- -CUCCUCCU--CUuCCg---G-GGUGGGcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 49158 0.66 0.478211
Target:  5'- aAGGGcGAGAGcguguGGaCCCACCUGGGUCc -3'
miRNA:   3'- cUCCUcCUCUU-----CCgGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 52292 0.68 0.359119
Target:  5'- aGAGGgccugugguaAGGAGAAGGCCCaCGCCauguggaGGaCCc -3'
miRNA:   3'- -CUCC----------UCCUCUUCCGGG-GUGGg------CCcGG- -5'
27126 3' -63.4 NC_005832.1 + 52362 0.68 0.351441
Target:  5'- aGGGGAGGAGGGucguGGCuCCUGgCCGuGGCa -3'
miRNA:   3'- -CUCCUCCUCUU----CCG-GGGUgGGC-CCGg -5'
27126 3' -63.4 NC_005832.1 + 53931 0.69 0.336437
Target:  5'- cAGGcgaAGGGGAcguAGGCCUUuccCCCGGGCg -3'
miRNA:   3'- cUCC---UCCUCU---UCCGGGGu--GGGCCCGg -5'
27126 3' -63.4 NC_005832.1 + 54012 0.67 0.433325
Target:  5'- uGAGGucuGGGAGAgacGGaGCCCCucuCCCuGGCg -3'
miRNA:   3'- -CUCC---UCCUCU---UC-CGGGGu--GGGcCCGg -5'
27126 3' -63.4 NC_005832.1 + 54014 0.66 0.496799
Target:  5'- gGAGGAGGcuGGGGCugCCCGCCCucGUCc -3'
miRNA:   3'- -CUCCUCCucUUCCG--GGGUGGGccCGG- -5'
27126 3' -63.4 NC_005832.1 + 56384 0.69 0.336436
Target:  5'- cAGGAGGGGuccuauGGCCCU-CCUGccGGCCa -3'
miRNA:   3'- cUCCUCCUCuu----CCGGGGuGGGC--CCGG- -5'
27126 3' -63.4 NC_005832.1 + 56470 0.74 0.154241
Target:  5'- gGAGGAGGAGcaguGGCCCUGggcuacgucCCCaGGCCg -3'
miRNA:   3'- -CUCCUCCUCuu--CCGGGGU---------GGGcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 56616 0.68 0.374824
Target:  5'- aGAGG-GGAGAugccaAGGCCUCggGCCUGGaCCu -3'
miRNA:   3'- -CUCCuCCUCU-----UCCGGGG--UGGGCCcGG- -5'
27126 3' -63.4 NC_005832.1 + 72692 0.66 0.481902
Target:  5'- cAGGGGuuuAGGAGGCCCUcccggagauaggggcGCggaCGGGCCg -3'
miRNA:   3'- cUCCUCc--UCUUCCGGGG---------------UGg--GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 73000 0.69 0.34388
Target:  5'- aAGG-GGAGAcagAGGCCCCAaaggcCCCGacgcGCCa -3'
miRNA:   3'- cUCCuCCUCU---UCCGGGGU-----GGGCc---CGG- -5'
27126 3' -63.4 NC_005832.1 + 74513 0.67 0.450991
Target:  5'- aGGGAGGAGGuaaaaauGGCucagCCUACCaGGGCg -3'
miRNA:   3'- cUCCUCCUCUu------CCG----GGGUGGgCCCGg -5'
27126 3' -63.4 NC_005832.1 + 75143 0.67 0.406757
Target:  5'- aGAGGAGaaaacaaGAGAugggcAGGCCCgACCCGGuGaCa -3'
miRNA:   3'- -CUCCUC-------CUCU-----UCCGGGgUGGGCC-CgG- -5'
27126 3' -63.4 NC_005832.1 + 79292 0.69 0.329112
Target:  5'- ---aGGGAGGccGCUCCACCCaGGCCu -3'
miRNA:   3'- cuccUCCUCUucCGGGGUGGGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.