miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 5712 0.67 0.399237
Target:  5'- -uGGuccccGuGAGAGGGCCuCCACUCggaGGGCCu -3'
miRNA:   3'- cuCCu----C-CUCUUCCGG-GGUGGG---CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 6504 0.67 0.450991
Target:  5'- cGAGGAcGGGGugucuguGGCCCUgugCgGGGCCa -3'
miRNA:   3'- -CUCCU-CCUCuu-----CCGGGGug-GgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 6703 0.66 0.506215
Target:  5'- gGGGGcAGGAGGAGccucCCCCACUaccccaGGGUg -3'
miRNA:   3'- -CUCC-UCCUCUUCc---GGGGUGGg-----CCCGg -5'
27126 3' -63.4 NC_005832.1 + 6838 0.67 0.454572
Target:  5'- uGGGGuaguGGGGGAGGCUCCuccugccCCCGucuaucuccuuacccGGCCu -3'
miRNA:   3'- -CUCCu---CCUCUUCCGGGGu------GGGC---------------CCGG- -5'
27126 3' -63.4 NC_005832.1 + 10954 0.69 0.34388
Target:  5'- cGGGGAGGugcuGGGAGGCaccggcaugaCCCACCuCaGGCUg -3'
miRNA:   3'- -CUCCUCC----UCUUCCG----------GGGUGG-GcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 11009 0.68 0.382041
Target:  5'- gGGGGAGGgugagcuaccucaAGGccgccAGGCCCgACgCGGGUCu -3'
miRNA:   3'- -CUCCUCC-------------UCU-----UCCGGGgUGgGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 11689 0.66 0.468135
Target:  5'- uGAGGAGGgccguccAGGAcGaCCCCGCCUuuGGCCa -3'
miRNA:   3'- -CUCCUCC-------UCUUcC-GGGGUGGGc-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 11769 0.69 0.336437
Target:  5'- gGGGGAGGucgacGAGGGCaCCCugCUGGacGCUu -3'
miRNA:   3'- -CUCCUCCu----CUUCCG-GGGugGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 11887 0.67 0.416067
Target:  5'- -cGGcGGuGAGGGCUCCGucuCCCauagcGGGCCg -3'
miRNA:   3'- cuCCuCCuCUUCCGGGGU---GGG-----CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 19755 0.7 0.28765
Target:  5'- -uGGGGGAGGcAGGUUCCcCCCGaGGCg -3'
miRNA:   3'- cuCCUCCUCU-UCCGGGGuGGGC-CCGg -5'
27126 3' -63.4 NC_005832.1 + 19943 0.66 0.47729
Target:  5'- -uGGGGGuGGAGGUCCUcggggcaucuccaGCCCGGacGUCa -3'
miRNA:   3'- cuCCUCCuCUUCCGGGG-------------UGGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 21073 0.76 0.105518
Target:  5'- cAGGGGGAGGAGGCUggugaUUGCCgGGGCCc -3'
miRNA:   3'- cUCCUCCUCUUCCGG-----GGUGGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 24411 0.68 0.359119
Target:  5'- cGAGGAGGuuaAGGuacaGGGUCCCGCCU--GCCa -3'
miRNA:   3'- -CUCCUCC---UCU----UCCGGGGUGGGccCGG- -5'
27126 3' -63.4 NC_005832.1 + 26449 0.67 0.416067
Target:  5'- cAGGAccuGGGGAgugucGGGCagCCACCCGgcGGCCc -3'
miRNA:   3'- cUCCU---CCUCU-----UCCGg-GGUGGGC--CCGG- -5'
27126 3' -63.4 NC_005832.1 + 27104 0.66 0.469046
Target:  5'- cGAGGAGGGGAccguaaAGuGCCCCGggUgCGGGa- -3'
miRNA:   3'- -CUCCUCCUCU------UC-CGGGGU--GgGCCCgg -5'
27126 3' -63.4 NC_005832.1 + 27200 0.67 0.450099
Target:  5'- cGAGGAguacGGAGAaggGGGCUCCGgguucuCCCacggacguuucgcGGGCCu -3'
miRNA:   3'- -CUCCU----CCUCU---UCCGGGGU------GGG-------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 27997 0.68 0.351441
Target:  5'- aAGGAGGuccAGGgCCUGCCCGGccGCCu -3'
miRNA:   3'- cUCCUCCucuUCCgGGGUGGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 31505 0.66 0.457268
Target:  5'- aGAGGcGGuGGGGAGGaCCUACCUgucgucguaaaaaaGGGCCu -3'
miRNA:   3'- -CUCC-UC-CUCUUCCgGGGUGGG--------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 31947 0.7 0.268509
Target:  5'- cAGG-GGAuGGGGCgCCCACCgCGaGGCCu -3'
miRNA:   3'- cUCCuCCUcUUCCG-GGGUGG-GC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 38370 0.66 0.478211
Target:  5'- uGAGGugguccAGGuAGAGGGCuCCCACCUcuacguccagcuGGGUa -3'
miRNA:   3'- -CUCC------UCC-UCUUCCG-GGGUGGG------------CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.