miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 93982 1.09 0.000395
Target:  5'- gGAGGAGGAGAAGGCCCCACCCGGGCCc -3'
miRNA:   3'- -CUCCUCCUCUUCCGGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 21073 0.76 0.105518
Target:  5'- cAGGGGGAGGAGGCUggugaUUGCCgGGGCCc -3'
miRNA:   3'- cUCCUCCUCUUCCGG-----GGUGGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 56470 0.74 0.154241
Target:  5'- gGAGGAGGAGcaguGGCCCUGggcuacgucCCCaGGCCg -3'
miRNA:   3'- -CUCCUCCUCuu--CCGGGGU---------GGGcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 94279 0.73 0.192066
Target:  5'- cGGGGAgcgcgugGGAGAAGGCCgCAgagaCCGuGGCCa -3'
miRNA:   3'- -CUCCU-------CCUCUUCCGGgGUg---GGC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 41573 0.73 0.192534
Target:  5'- uGAGGccgAGGAGGAGGCCgCCGCCgucagggaGGcGCCc -3'
miRNA:   3'- -CUCC---UCCUCUUCCGG-GGUGGg-------CC-CGG- -5'
27126 3' -63.4 NC_005832.1 + 93839 0.72 0.212089
Target:  5'- uGGGGGGAuuGGGCCCgGgUgGGGCCu -3'
miRNA:   3'- cUCCUCCUcuUCCGGGgUgGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 79688 0.72 0.217238
Target:  5'- uGGGGAGcAGGuuGGCCCUgagGCCCGGGUa -3'
miRNA:   3'- -CUCCUCcUCUu-CCGGGG---UGGGCCCGg -5'
27126 3' -63.4 NC_005832.1 + 31947 0.7 0.268509
Target:  5'- cAGG-GGAuGGGGCgCCCACCgCGaGGCCu -3'
miRNA:   3'- cUCCuCCUcUUCCG-GGGUGG-GC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 19755 0.7 0.28765
Target:  5'- -uGGGGGAGGcAGGUUCCcCCCGaGGCg -3'
miRNA:   3'- cuCCUCCUCU-UCCGGGGuGGGC-CCGg -5'
27126 3' -63.4 NC_005832.1 + 90775 0.69 0.314817
Target:  5'- aAGGAGccuccuGAGGGgCCCGCCCucGGCCg -3'
miRNA:   3'- cUCCUCcu----CUUCCgGGGUGGGc-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 79292 0.69 0.329112
Target:  5'- ---aGGGAGGccGCUCCACCCaGGCCu -3'
miRNA:   3'- cuccUCCUCUucCGGGGUGGGcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 56384 0.69 0.336436
Target:  5'- cAGGAGGGGuccuauGGCCCU-CCUGccGGCCa -3'
miRNA:   3'- cUCCUCCUCuu----CCGGGGuGGGC--CCGG- -5'
27126 3' -63.4 NC_005832.1 + 11769 0.69 0.336437
Target:  5'- gGGGGAGGucgacGAGGGCaCCCugCUGGacGCUu -3'
miRNA:   3'- -CUCCUCCu----CUUCCG-GGGugGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 53931 0.69 0.336437
Target:  5'- cAGGcgaAGGGGAcguAGGCCUUuccCCCGGGCg -3'
miRNA:   3'- cUCC---UCCUCU---UCCGGGGu--GGGCCCGg -5'
27126 3' -63.4 NC_005832.1 + 73000 0.69 0.34388
Target:  5'- aAGG-GGAGAcagAGGCCCCAaaggcCCCGacgcGCCa -3'
miRNA:   3'- cUCCuCCUCU---UCCGGGGU-----GGGCc---CGG- -5'
27126 3' -63.4 NC_005832.1 + 10954 0.69 0.34388
Target:  5'- cGGGGAGGugcuGGGAGGCaccggcaugaCCCACCuCaGGCUg -3'
miRNA:   3'- -CUCCUCC----UCUUCCG----------GGGUGG-GcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 52362 0.68 0.351441
Target:  5'- aGGGGAGGAGGGucguGGCuCCUGgCCGuGGCa -3'
miRNA:   3'- -CUCCUCCUCUU----CCG-GGGUgGGC-CCGg -5'
27126 3' -63.4 NC_005832.1 + 27997 0.68 0.351441
Target:  5'- aAGGAGGuccAGGgCCUGCCCGGccGCCu -3'
miRNA:   3'- cUCCUCCucuUCCgGGGUGGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 24411 0.68 0.359119
Target:  5'- cGAGGAGGuuaAGGuacaGGGUCCCGCCU--GCCa -3'
miRNA:   3'- -CUCCUCC---UCU----UCCGGGGUGGGccCGG- -5'
27126 3' -63.4 NC_005832.1 + 52292 0.68 0.359119
Target:  5'- aGAGGgccugugguaAGGAGAAGGCCCaCGCCauguggaGGaCCc -3'
miRNA:   3'- -CUCC----------UCCUCUUCCGGG-GUGGg------CCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.