miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 3' -63.4 NC_005832.1 + 44126 0.66 0.487463
Target:  5'- aAGGAcgGGAGGAGGUCCCGC--GGGaCUg -3'
miRNA:   3'- cUCCU--CCUCUUCCGGGGUGggCCC-GG- -5'
27126 3' -63.4 NC_005832.1 + 26449 0.67 0.416067
Target:  5'- cAGGAccuGGGGAgugucGGGCagCCACCCGgcGGCCc -3'
miRNA:   3'- cUCCU---CCUCU-----UCCGg-GGUGGGC--CCGG- -5'
27126 3' -63.4 NC_005832.1 + 79981 0.67 0.4212
Target:  5'- aGGGAGGuGggGGaCCCCaacgucccguuuaACCUccucaaguacuuuaGGGCCc -3'
miRNA:   3'- cUCCUCCuCuuCC-GGGG-------------UGGG--------------CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 6504 0.67 0.450991
Target:  5'- cGAGGAcGGGGugucuguGGCCCUgugCgGGGCCa -3'
miRNA:   3'- -CUCCU-CCUCuu-----CCGGGGug-GgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 74513 0.67 0.450991
Target:  5'- aGGGAGGAGGuaaaaauGGCucagCCUACCaGGGCg -3'
miRNA:   3'- cUCCUCCUCUu------CCG----GGGUGGgCCCGg -5'
27126 3' -63.4 NC_005832.1 + 86979 0.67 0.450991
Target:  5'- -cGGAGGcgucaaAGAAGGCCCUgACCaUGaGGCUg -3'
miRNA:   3'- cuCCUCC------UCUUCCGGGG-UGG-GC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 19943 0.66 0.47729
Target:  5'- -uGGGGGuGGAGGUCCUcggggcaucuccaGCCCGGacGUCa -3'
miRNA:   3'- cuCCUCCuCUUCCGGGG-------------UGGGCC--CGG- -5'
27126 3' -63.4 NC_005832.1 + 49158 0.66 0.478211
Target:  5'- aAGGGcGAGAGcguguGGaCCCACCUGGGUCc -3'
miRNA:   3'- cUCCUcCUCUU-----CCgGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 72692 0.66 0.481902
Target:  5'- cAGGGGuuuAGGAGGCCCUcccggagauaggggcGCggaCGGGCCg -3'
miRNA:   3'- cUCCUCc--UCUUCCGGGG---------------UGg--GCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 38435 0.67 0.416067
Target:  5'- ---aGGGAGAuGGacugcuccaCCCUGCCCGGGCUa -3'
miRNA:   3'- cuccUCCUCUuCC---------GGGGUGGGCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 11887 0.67 0.416067
Target:  5'- -cGGcGGuGAGGGCUCCGucuCCCauagcGGGCCg -3'
miRNA:   3'- cuCCuCCuCUUCCGGGGU---GGG-----CCCGG- -5'
27126 3' -63.4 NC_005832.1 + 103965 0.67 0.399237
Target:  5'- --cGAGGAGAugguGGCCCUGa--GGGCCg -3'
miRNA:   3'- cucCUCCUCUu---CCGGGGUgggCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 93839 0.72 0.212089
Target:  5'- uGGGGGGAuuGGGCCCgGgUgGGGCCu -3'
miRNA:   3'- cUCCUCCUcuUCCGGGgUgGgCCCGG- -5'
27126 3' -63.4 NC_005832.1 + 31947 0.7 0.268509
Target:  5'- cAGG-GGAuGGGGCgCCCACCgCGaGGCCu -3'
miRNA:   3'- cUCCuCCUcUUCCG-GGGUGG-GC-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 19755 0.7 0.28765
Target:  5'- -uGGGGGAGGcAGGUUCCcCCCGaGGCg -3'
miRNA:   3'- cuCCUCCUCU-UCCGGGGuGGGC-CCGg -5'
27126 3' -63.4 NC_005832.1 + 90775 0.69 0.314817
Target:  5'- aAGGAGccuccuGAGGGgCCCGCCCucGGCCg -3'
miRNA:   3'- cUCCUCcu----CUUCCgGGGUGGGc-CCGG- -5'
27126 3' -63.4 NC_005832.1 + 79292 0.69 0.329112
Target:  5'- ---aGGGAGGccGCUCCACCCaGGCCu -3'
miRNA:   3'- cuccUCCUCUucCGGGGUGGGcCCGG- -5'
27126 3' -63.4 NC_005832.1 + 56384 0.69 0.336436
Target:  5'- cAGGAGGGGuccuauGGCCCU-CCUGccGGCCa -3'
miRNA:   3'- cUCCUCCUCuu----CCGGGGuGGGC--CCGG- -5'
27126 3' -63.4 NC_005832.1 + 73000 0.69 0.34388
Target:  5'- aAGG-GGAGAcagAGGCCCCAaaggcCCCGacgcGCCa -3'
miRNA:   3'- cUCCuCCUCU---UCCGGGGU-----GGGCc---CGG- -5'
27126 3' -63.4 NC_005832.1 + 39772 0.67 0.398407
Target:  5'- uGAGGGGGucuaGAGGCCCC-CCggagcggUGGGUCc -3'
miRNA:   3'- -CUCCUCCuc--UUCCGGGGuGG-------GCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.