Results 21 - 40 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 73000 | 0.69 | 0.34388 |
Target: 5'- aAGG-GGAGAcagAGGCCCCAaaggcCCCGacgcGCCa -3' miRNA: 3'- cUCCuCCUCU---UCCGGGGU-----GGGCc---CGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 39772 | 0.67 | 0.398407 |
Target: 5'- uGAGGGGGucuaGAGGCCCC-CCggagcggUGGGUCc -3' miRNA: 3'- -CUCCUCCuc--UUCCGGGGuGG-------GCCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 103965 | 0.67 | 0.399237 |
Target: 5'- --cGAGGAGAugguGGCCCUGa--GGGCCg -3' miRNA: 3'- cucCUCCUCUu---CCGGGGUgggCCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 11887 | 0.67 | 0.416067 |
Target: 5'- -cGGcGGuGAGGGCUCCGucuCCCauagcGGGCCg -3' miRNA: 3'- cuCCuCCuCUUCCGGGGU---GGG-----CCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 27997 | 0.68 | 0.351441 |
Target: 5'- aAGGAGGuccAGGgCCUGCCCGGccGCCu -3' miRNA: 3'- cUCCUCCucuUCCgGGGUGGGCC--CGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 52292 | 0.68 | 0.359119 |
Target: 5'- aGAGGgccugugguaAGGAGAAGGCCCaCGCCauguggaGGaCCc -3' miRNA: 3'- -CUCC----------UCCUCUUCCGGG-GUGGg------CCcGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 24411 | 0.68 | 0.359119 |
Target: 5'- cGAGGAGGuuaAGGuacaGGGUCCCGCCU--GCCa -3' miRNA: 3'- -CUCCUCC---UCU----UCCGGGGUGGGccCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 96023 | 0.68 | 0.374824 |
Target: 5'- --aGAGGGGAGGGCCCguguUCaGGGCCc -3' miRNA: 3'- cucCUCCUCUUCCGGGgu--GGgCCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 95609 | 0.68 | 0.374824 |
Target: 5'- --aGAGGGGAGGGCCCguguUCaGGGCCc -3' miRNA: 3'- cucCUCCUCUUCCGGGgu--GGgCCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 83410 | 0.68 | 0.374824 |
Target: 5'- aGAGGGccuGGAGcucuuuGGCCCCGCCaccucaaGGGUa -3' miRNA: 3'- -CUCCU---CCUCuu----CCGGGGUGGg------CCCGg -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 56616 | 0.68 | 0.374824 |
Target: 5'- aGAGG-GGAGAugccaAGGCCUCggGCCUGGaCCu -3' miRNA: 3'- -CUCCuCCUCU-----UCCGGGG--UGGGCCcGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 52362 | 0.68 | 0.351441 |
Target: 5'- aGGGGAGGAGGGucguGGCuCCUGgCCGuGGCa -3' miRNA: 3'- -CUCCUCCUCUU----CCG-GGGUgGGC-CCGg -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 10954 | 0.69 | 0.34388 |
Target: 5'- cGGGGAGGugcuGGGAGGCaccggcaugaCCCACCuCaGGCUg -3' miRNA: 3'- -CUCCUCC----UCUUCCG----------GGGUGG-GcCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 11769 | 0.69 | 0.336437 |
Target: 5'- gGGGGAGGucgacGAGGGCaCCCugCUGGacGCUu -3' miRNA: 3'- -CUCCUCCu----CUUCCG-GGGugGGCC--CGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 53931 | 0.69 | 0.336437 |
Target: 5'- cAGGcgaAGGGGAcguAGGCCUUuccCCCGGGCg -3' miRNA: 3'- cUCC---UCCUCU---UCCGGGGu--GGGCCCGg -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 79688 | 0.72 | 0.217238 |
Target: 5'- uGGGGAGcAGGuuGGCCCUgagGCCCGGGUa -3' miRNA: 3'- -CUCCUCcUCUu-CCGGGG---UGGGCCCGg -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 41573 | 0.73 | 0.192534 |
Target: 5'- uGAGGccgAGGAGGAGGCCgCCGCCgucagggaGGcGCCc -3' miRNA: 3'- -CUCC---UCCUCUUCCGG-GGUGGg-------CC-CGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 94279 | 0.73 | 0.192066 |
Target: 5'- cGGGGAgcgcgugGGAGAAGGCCgCAgagaCCGuGGCCa -3' miRNA: 3'- -CUCCU-------CCUCUUCCGGgGUg---GGC-CCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 56470 | 0.74 | 0.154241 |
Target: 5'- gGAGGAGGAGcaguGGCCCUGggcuacgucCCCaGGCCg -3' miRNA: 3'- -CUCCUCCUCuu--CCGGGGU---------GGGcCCGG- -5' |
|||||||
27126 | 3' | -63.4 | NC_005832.1 | + | 80562 | 0.66 | 0.506215 |
Target: 5'- cAGGGGGGGcauGGGCCaaguCACCaGGGUa -3' miRNA: 3'- cUCCUCCUCu--UCCGGg---GUGGgCCCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home