miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27126 5' -48.5 NC_005832.1 + 90058 0.66 0.996942
Target:  5'- cCCucuGCCGGuUCcGCCAAc-CCCGAg -3'
miRNA:   3'- -GGuu-UGGCCuAGuUGGUUuuGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 95524 0.67 0.992848
Target:  5'- cCCAAAcagcuucgagguguCCGGAgCGGCCAGGGucCCCGGg -3'
miRNA:   3'- -GGUUU--------------GGCCUaGUUGGUUUU--GGGCUa -5'
27126 5' -48.5 NC_005832.1 + 10798 0.68 0.984473
Target:  5'- gCCGGACaggagguggGGAUCGGCUgcggaggccaGGAACCCGAg -3'
miRNA:   3'- -GGUUUGg--------CCUAGUUGG----------UUUUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 66827 0.69 0.98022
Target:  5'- cCCAAACaCGGuccCGGCCGcgGCCUGGg -3'
miRNA:   3'- -GGUUUG-GCCua-GUUGGUuuUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 29372 0.69 0.977793
Target:  5'- cCCAGGCCGGGc--GCCG-AACCCGu- -3'
miRNA:   3'- -GGUUUGGCCUaguUGGUuUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 67817 0.69 0.977793
Target:  5'- cCCAGGCCgaguGGAUCGccACCGgguccGAACCCGc- -3'
miRNA:   3'- -GGUUUGG----CCUAGU--UGGU-----UUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 91430 0.69 0.977793
Target:  5'- gCCAAGCUGGAcgUGGCCAggcagaggAAGCCCGc- -3'
miRNA:   3'- -GGUUUGGCCUa-GUUGGU--------UUUGGGCua -5'
27126 5' -48.5 NC_005832.1 + 39539 0.69 0.975153
Target:  5'- aCCGAugucACCGGAUgGACCAAAggguccAUCUGGUu -3'
miRNA:   3'- -GGUU----UGGCCUAgUUGGUUU------UGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 14329 0.69 0.9692
Target:  5'- uCCAAAcgcuguCCGGAgucuaUCGACCGu--CCCGAUg -3'
miRNA:   3'- -GGUUU------GGCCU-----AGUUGGUuuuGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 95919 0.71 0.929919
Target:  5'- gCAAGCCcGAgggCAGCCA--GCCCGAg -3'
miRNA:   3'- gGUUUGGcCUa--GUUGGUuuUGGGCUa -5'
27126 5' -48.5 NC_005832.1 + 93948 1.08 0.01242
Target:  5'- cCCAAACCGGAUCAACCAAAACCCGAUc -3'
miRNA:   3'- -GGUUUGGCCUAGUUGGUUUUGGGCUA- -5'
27126 5' -48.5 NC_005832.1 + 93762 0.66 0.997436
Target:  5'- gCAAAcCCGGcUCAcacccuccacGCCGGAGCCCuGAg -3'
miRNA:   3'- gGUUU-GGCCuAGU----------UGGUUUUGGG-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.