Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27131 | 3' | -44.8 | NC_005832.1 | + | 100501 | 1.16 | 0.010332 |
Target: 5'- gGCCACACAGAGUAAGCAUUUACAUCCc -3' miRNA: 3'- -CGGUGUGUCUCAUUCGUAAAUGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 52706 | 0.77 | 0.878383 |
Target: 5'- cCCcCACAGAGUGAGCGgcgGCggCCg -3' miRNA: 3'- cGGuGUGUCUCAUUCGUaaaUGuaGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 87092 | 0.74 | 0.968366 |
Target: 5'- cGCCucCGCcaAGaAGUGAGCGUcuucUUGCAUCCu -3' miRNA: 3'- -CGGu-GUG--UC-UCAUUCGUA----AAUGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 71850 | 0.72 | 0.98434 |
Target: 5'- cGCUACGCAaAGUGGGCG---ACAUUCa -3' miRNA: 3'- -CGGUGUGUcUCAUUCGUaaaUGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 32364 | 0.72 | 0.98434 |
Target: 5'- uGCCu---GGAGUAAGCGUUUucCAUCCc -3' miRNA: 3'- -CGGugugUCUCAUUCGUAAAu-GUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 33754 | 0.72 | 0.986255 |
Target: 5'- gGCUGCACAGAGUGcGCAgacUGCAa-- -3' miRNA: 3'- -CGGUGUGUCUCAUuCGUaa-AUGUagg -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 89816 | 0.71 | 0.993282 |
Target: 5'- gGCCACauggaACAGGGUGAGgGU---CGUCCc -3' miRNA: 3'- -CGGUG-----UGUCUCAUUCgUAaauGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 13774 | 0.7 | 0.997574 |
Target: 5'- gGCCAUcgaguacCAGGGUAGGCAgcacuacgagUACGUCUc -3' miRNA: 3'- -CGGUGu------GUCUCAUUCGUaa--------AUGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 92079 | 0.7 | 0.997574 |
Target: 5'- aGCCucuCGuCGGAG-GAGCAUUUGCAacucuuuaggauUCCg -3' miRNA: 3'- -CGGu--GU-GUCUCaUUCGUAAAUGU------------AGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 87556 | 0.69 | 0.999113 |
Target: 5'- gGCCAuCACAGAc--GGCAUggUGCcUCCg -3' miRNA: 3'- -CGGU-GUGUCUcauUCGUAa-AUGuAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 71388 | 0.69 | 0.999113 |
Target: 5'- gGCCACGCAGAcaccgccgcggcGUAGGaagaguCGUCCc -3' miRNA: 3'- -CGGUGUGUCU------------CAUUCguaaauGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 12784 | 0.68 | 0.999288 |
Target: 5'- cGCCaggGCGuCAGAGUcuauGGuCAUUgggGCGUCCg -3' miRNA: 3'- -CGG---UGU-GUCUCAu---UC-GUAAa--UGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 43379 | 0.68 | 0.999288 |
Target: 5'- cGCCGCACAGGaccc-CGUccACAUCCa -3' miRNA: 3'- -CGGUGUGUCUcauucGUAaaUGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 20399 | 0.68 | 0.999288 |
Target: 5'- -aCGCugGGGGUGAGUccugGUUUgGCGUCUg -3' miRNA: 3'- cgGUGugUCUCAUUCG----UAAA-UGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 103313 | 0.68 | 0.999551 |
Target: 5'- uGCCAUgACAGAGUA--CAUcu-CAUCCa -3' miRNA: 3'- -CGGUG-UGUCUCAUucGUAaauGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 23187 | 0.68 | 0.999726 |
Target: 5'- aGCCACGCAGAcuGUGAGag-----AUCCg -3' miRNA: 3'- -CGGUGUGUCU--CAUUCguaaaugUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 76104 | 0.67 | 0.999788 |
Target: 5'- gGCCACGgccaAGAgGUGAGCGUUgcGCAcCCc -3' miRNA: 3'- -CGGUGUg---UCU-CAUUCGUAAa-UGUaGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 67220 | 0.67 | 0.999788 |
Target: 5'- gGCCucgUACGGAGUGgccuccagGGCcucgGCGUCCa -3' miRNA: 3'- -CGGu--GUGUCUCAU--------UCGuaaaUGUAGG- -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 26706 | 0.67 | 0.999788 |
Target: 5'- aGUCGCACAG-GUAGGC--UUGgAUCa -3' miRNA: 3'- -CGGUGUGUCuCAUUCGuaAAUgUAGg -5' |
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27131 | 3' | -44.8 | NC_005832.1 | + | 349 | 0.67 | 0.999788 |
Target: 5'- aGCCGCGCAGGGUAcauaccAGCAcug--GUCg -3' miRNA: 3'- -CGGUGUGUCUCAU------UCGUaaaugUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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