miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27131 3' -44.8 NC_005832.1 + 349 0.67 0.999788
Target:  5'- aGCCGCGCAGGGUAcauaccAGCAcug--GUCg -3'
miRNA:   3'- -CGGUGUGUCUCAU------UCGUaaaugUAGg -5'
27131 3' -44.8 NC_005832.1 + 2365 0.66 0.999972
Target:  5'- uCCACGacacagaAGAGUGaAGCAggucUACGUCUa -3'
miRNA:   3'- cGGUGUg------UCUCAU-UCGUaa--AUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 5207 0.66 0.99993
Target:  5'- uCUGCAgCAGGG-AGGCAggaccgGCAUCCu -3'
miRNA:   3'- cGGUGU-GUCUCaUUCGUaaa---UGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 11093 0.67 0.999907
Target:  5'- uGCUgaGgGCAGAGUAGGUGUUgACG-CCu -3'
miRNA:   3'- -CGG--UgUGUCUCAUUCGUAAaUGUaGG- -5'
27131 3' -44.8 NC_005832.1 + 12784 0.68 0.999288
Target:  5'- cGCCaggGCGuCAGAGUcuauGGuCAUUgggGCGUCCg -3'
miRNA:   3'- -CGG---UGU-GUCUCAu---UC-GUAAa--UGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 13774 0.7 0.997574
Target:  5'- gGCCAUcgaguacCAGGGUAGGCAgcacuacgagUACGUCUc -3'
miRNA:   3'- -CGGUGu------GUCUCAUUCGUaa--------AUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 14386 0.67 0.999889
Target:  5'- uCCACACGGcucgcAGUAugcgucguuaucaucGGCccggguGUUUACGUCCa -3'
miRNA:   3'- cGGUGUGUC-----UCAU---------------UCG------UAAAUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 20399 0.68 0.999288
Target:  5'- -aCGCugGGGGUGAGUccugGUUUgGCGUCUg -3'
miRNA:   3'- cgGUGugUCUCAUUCG----UAAA-UGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 23187 0.68 0.999726
Target:  5'- aGCCACGCAGAcuGUGAGag-----AUCCg -3'
miRNA:   3'- -CGGUGUGUCU--CAUUCguaaaugUAGG- -5'
27131 3' -44.8 NC_005832.1 + 26706 0.67 0.999788
Target:  5'- aGUCGCACAG-GUAGGC--UUGgAUCa -3'
miRNA:   3'- -CGGUGUGUCuCAUUCGuaAAUgUAGg -5'
27131 3' -44.8 NC_005832.1 + 31424 0.66 0.999926
Target:  5'- gGCCACACGGccgcccuuGCccugucUUGCAUCCa -3'
miRNA:   3'- -CGGUGUGUCucauu---CGua----AAUGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 32364 0.72 0.98434
Target:  5'- uGCCu---GGAGUAAGCGUUUucCAUCCc -3'
miRNA:   3'- -CGGugugUCUCAUUCGUAAAu-GUAGG- -5'
27131 3' -44.8 NC_005832.1 + 33697 0.66 0.99998
Target:  5'- uGCCcCGCAGAGUuuuGCAUggGCuUUa -3'
miRNA:   3'- -CGGuGUGUCUCAuu-CGUAaaUGuAGg -5'
27131 3' -44.8 NC_005832.1 + 33754 0.72 0.986255
Target:  5'- gGCUGCACAGAGUGcGCAgacUGCAa-- -3'
miRNA:   3'- -CGGUGUGUCUCAUuCGUaa-AUGUagg -5'
27131 3' -44.8 NC_005832.1 + 36506 0.67 0.999876
Target:  5'- aGCCGgcggcCACGGAGgcGGCGU--ACG-CCa -3'
miRNA:   3'- -CGGU-----GUGUCUCauUCGUAaaUGUaGG- -5'
27131 3' -44.8 NC_005832.1 + 36699 0.66 0.99993
Target:  5'- cGCCAgGCAGAcGggagacauacUGAGCAggUACG-CCa -3'
miRNA:   3'- -CGGUgUGUCU-C----------AUUCGUaaAUGUaGG- -5'
27131 3' -44.8 NC_005832.1 + 38569 0.67 0.999907
Target:  5'- cCCGgGCAGGGUgGAGCAguc-CAUCUc -3'
miRNA:   3'- cGGUgUGUCUCA-UUCGUaaauGUAGG- -5'
27131 3' -44.8 NC_005832.1 + 41975 0.67 0.999788
Target:  5'- gGCCAuCGcCGGGGUGAGCuucucccaggGUUUGcCGUCUg -3'
miRNA:   3'- -CGGU-GU-GUCUCAUUCG----------UAAAU-GUAGG- -5'
27131 3' -44.8 NC_005832.1 + 42008 0.67 0.999788
Target:  5'- cGCCGCAgAGuGGUAGGUg---GCGUCg -3'
miRNA:   3'- -CGGUGUgUC-UCAUUCGuaaaUGUAGg -5'
27131 3' -44.8 NC_005832.1 + 43379 0.68 0.999288
Target:  5'- cGCCGCACAGGaccc-CGUccACAUCCa -3'
miRNA:   3'- -CGGUGUGUCUcauucGUAaaUGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.