miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27138 5' -58.6 NC_005832.1 + 39250 0.69 0.550157
Target:  5'- aUGUUCG-GcAGGGCaggcaggaaCGGCGUaaagGGGCCCCg -3'
miRNA:   3'- -ACGAGCaC-UCCUG---------GCCGCA----UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 39442 0.66 0.722196
Target:  5'- gGUcCGUG-GGAgCGGC-UGGGCCUCa -3'
miRNA:   3'- aCGaGCACuCCUgGCCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 42263 0.66 0.722196
Target:  5'- gUGCcCGUG-GGACUGGUcuuuaAGGCCCUu -3'
miRNA:   3'- -ACGaGCACuCCUGGCCGca---UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 43385 0.72 0.375826
Target:  5'- gGUUCGUGAGGAg-GGUGcUGGACCCa -3'
miRNA:   3'- aCGAGCACUCCUggCCGC-AUCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 45820 0.7 0.520494
Target:  5'- aGCUUGUaGAGGA-CGGCcauguacucUGGACCCCc -3'
miRNA:   3'- aCGAGCA-CUCCUgGCCGc--------AUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 47055 0.67 0.692247
Target:  5'- cGUUCGaguggGAGGACCacuugaacuGCGUccacGACCCCa -3'
miRNA:   3'- aCGAGCa----CUCCUGGc--------CGCAu---CUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 48113 0.74 0.321628
Target:  5'- gGCUgGUgagcugGAGGACUGGC-UGGGCCCUg -3'
miRNA:   3'- aCGAgCA------CUCCUGGCCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54523 0.69 0.560163
Target:  5'- -cCUCGUGGGGcCUGGgGccGACCCUg -3'
miRNA:   3'- acGAGCACUCCuGGCCgCauCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 54735 0.67 0.661847
Target:  5'- cGCcugCGaGAGGACCGGCcu-GugCCUg -3'
miRNA:   3'- aCGa--GCaCUCCUGGCCGcauCugGGG- -5'
27138 5' -58.6 NC_005832.1 + 54810 0.68 0.600622
Target:  5'- gGC-CGacggGGGGACCGuCcUGGACCCCg -3'
miRNA:   3'- aCGaGCa---CUCCUGGCcGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 55085 0.66 0.741792
Target:  5'- gGC-CGUGAGGaACCGGU--AGGCgUCg -3'
miRNA:   3'- aCGaGCACUCC-UGGCCGcaUCUGgGG- -5'
27138 5' -58.6 NC_005832.1 + 55660 0.66 0.712278
Target:  5'- cUGC-CGUGGGGACUGG----GACUCCu -3'
miRNA:   3'- -ACGaGCACUCCUGGCCgcauCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 55940 0.69 0.550157
Target:  5'- gGCUCcgaGAGGuacauCUGG-GUGGACCCCu -3'
miRNA:   3'- aCGAGca-CUCCu----GGCCgCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 56220 0.66 0.741792
Target:  5'- cGCgUCGU--GGGCCGGUGccggGGACUCUg -3'
miRNA:   3'- aCG-AGCAcuCCUGGCCGCa---UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 67179 0.71 0.435863
Target:  5'- aGCUCGaggaggGGGGAUgGGCGUGGACa-- -3'
miRNA:   3'- aCGAGCa-----CUCCUGgCCGCAUCUGggg -5'
27138 5' -58.6 NC_005832.1 + 75647 0.74 0.29338
Target:  5'- cGCU--UGAGGGCCgGGUGgAGGCCCCu -3'
miRNA:   3'- aCGAgcACUCCUGG-CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 86440 0.67 0.682152
Target:  5'- aGC-CGccUGAGGagGCUGGUGUGGAgCCUa -3'
miRNA:   3'- aCGaGC--ACUCC--UGGCCGCAUCUgGGG- -5'
27138 5' -58.6 NC_005832.1 + 86488 0.69 0.530317
Target:  5'- aGCcUGUaGAGGagGCUGGUGUGGAUCCUg -3'
miRNA:   3'- aCGaGCA-CUCC--UGGCCGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 94353 0.67 0.672016
Target:  5'- gGaCUgCGUGAGGACCuuuguuGGCGgaaagaGGGCCUCc -3'
miRNA:   3'- aC-GA-GCACUCCUGG------CCGCa-----UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 94557 0.67 0.682152
Target:  5'- cUGUcgUCGUGAGGGgaGGCagguucgugggaGUGGAgCCCa -3'
miRNA:   3'- -ACG--AGCACUCCUggCCG------------CAUCUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.