miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27138 5' -58.6 NC_005832.1 + 683 0.73 0.359728
Target:  5'- aGCUCGUGAgcaGGGuguccUCGGaCGcGGACCCCg -3'
miRNA:   3'- aCGAGCACU---CCU-----GGCC-GCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 1661 0.72 0.384055
Target:  5'- gGCUCaggccaucggcaGUGAGG-CUGGCGgcucccGACCCCa -3'
miRNA:   3'- aCGAG------------CACUCCuGGCCGCau----CUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 1684 1.11 0.000862
Target:  5'- gUGCUCGUGAGGACCGGCGUAGACCCCu -3'
miRNA:   3'- -ACGAGCACUCCUGGCCGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 2124 0.69 0.550157
Target:  5'- aUGCUCGUGGugcuGGCCcccauauucGGCG-AGGCCCUg -3'
miRNA:   3'- -ACGAGCACUc---CUGG---------CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 2653 0.68 0.631233
Target:  5'- uUGUcgCGgagGAGGGCCuguggacuauGGCGaGGACCCUg -3'
miRNA:   3'- -ACGa-GCa--CUCCUGG----------CCGCaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 4873 0.71 0.435863
Target:  5'- cGCUCGUGAGG-CUGGU--AGACgCUCa -3'
miRNA:   3'- aCGAGCACUCCuGGCCGcaUCUG-GGG- -5'
27138 5' -58.6 NC_005832.1 + 7532 0.66 0.757198
Target:  5'- gUGCUCGUucgucagGAGGgaccuccuggaccuGCUGGcCGUcAGACCCa -3'
miRNA:   3'- -ACGAGCA-------CUCC--------------UGGCC-GCA-UCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 10001 0.67 0.702292
Target:  5'- gGCUcaCGUGAGGcuggaCGGCGgaggcGACCCa -3'
miRNA:   3'- aCGA--GCACUCCug---GCCGCau---CUGGGg -5'
27138 5' -58.6 NC_005832.1 + 10947 0.69 0.550157
Target:  5'- gUGCUgG-GAGGcACCGGCau-GACCCa -3'
miRNA:   3'- -ACGAgCaCUCC-UGGCCGcauCUGGGg -5'
27138 5' -58.6 NC_005832.1 + 13142 0.7 0.520494
Target:  5'- gGCUCGUcaaGACCaggGGCcUGGACCCCa -3'
miRNA:   3'- aCGAGCAcucCUGG---CCGcAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 14502 0.68 0.641448
Target:  5'- aGC-CGUGuGGACUGcgcaacaaugucGCGUAGGCCUUc -3'
miRNA:   3'- aCGaGCACuCCUGGC------------CGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 18254 0.66 0.732037
Target:  5'- cGCgaagGUGAGGGCCaGUGgacucagAGACgCCCu -3'
miRNA:   3'- aCGag--CACUCCUGGcCGCa------UCUG-GGG- -5'
27138 5' -58.6 NC_005832.1 + 20524 0.68 0.621018
Target:  5'- -cCUC-UGAGGGCCccCGUGGACCCUc -3'
miRNA:   3'- acGAGcACUCCUGGccGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 21084 0.66 0.722196
Target:  5'- gGCUgGUGAuuGCCGGggccCGUAGggacGCCCCg -3'
miRNA:   3'- aCGAgCACUccUGGCC----GCAUC----UGGGG- -5'
27138 5' -58.6 NC_005832.1 + 23154 0.67 0.702292
Target:  5'- gUGUcCGUGAguGGACaCGGUGacGGAUCCCu -3'
miRNA:   3'- -ACGaGCACU--CCUG-GCCGCa-UCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 25487 0.66 0.761007
Target:  5'- aUGUaCGUGAGGagaaaguaGCUGGCGauguuaaagGGuACCCCg -3'
miRNA:   3'- -ACGaGCACUCC--------UGGCCGCa--------UC-UGGGG- -5'
27138 5' -58.6 NC_005832.1 + 27207 0.68 0.641448
Target:  5'- cGCUCGUcGAGGAguaCGGagaaGgGGGCUCCg -3'
miRNA:   3'- aCGAGCA-CUCCUg--GCCg---CaUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 31218 0.72 0.418143
Target:  5'- cGC-CaUGAGGACC-GCGUAGGCCUUg -3'
miRNA:   3'- aCGaGcACUCCUGGcCGCAUCUGGGG- -5'
27138 5' -58.6 NC_005832.1 + 31788 0.67 0.661847
Target:  5'- gGCUaaacaGUGGGGgcaugugaugcuGCCGGgGUAGuCCUCg -3'
miRNA:   3'- aCGAg----CACUCC------------UGGCCgCAUCuGGGG- -5'
27138 5' -58.6 NC_005832.1 + 32160 0.66 0.761007
Target:  5'- gGC-CG-GAGGAgCGGCGaggGGAgUCCa -3'
miRNA:   3'- aCGaGCaCUCCUgGCCGCa--UCUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.